Analysis of interatomic Contacts of Structural Units in PDB entry:
8G96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G96 entry

There are 2 chains in PDB entry 8G96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	ALA 411
B	THR 6	ALA 411

There are 34 helices in PDB entry 8G96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	21	Right-handed 310
Helix 2	AA2	A	25	37	Right-handed alpha
Helix 3	AA3	A	52	69	Right-handed alpha
Helix 4	AA4	A	84	97	Right-handed alpha
Helix 5	AA5	A	109	121	Right-handed alpha
Helix 6	AA6	A	128	133	Right-handed alpha
Helix 7	AA7	A	134	136	Right-handed 310
Helix 8	AA8	A	145	149	Right-handed alpha
Helix 9	AA9	A	186	201	Right-handed alpha
Helix 10	AB1	A	216	230	Right-handed alpha
Helix 11	AB2	A	239	242	Right-handed 310
Helix 12	AB3	A	243	254	Right-handed alpha
Helix 13	AB4	A	262	268	Right-handed alpha
Helix 14	AB5	A	287	295	Right-handed alpha
Helix 15	AB6	A	307	311	Right-handed 310
Helix 16	AB7	A	368	375	Right-handed alpha
Helix 17	AB8	A	384	387	Right-handed 310
Helix 18	AB9	B	17	21	Right-handed 310
Helix 19	AC1	B	25	37	Right-handed alpha
Helix 20	AC2	B	52	69	Right-handed alpha
Helix 21	AC3	B	84	97	Right-handed alpha
Helix 22	AC4	B	109	121	Right-handed alpha
Helix 23	AC5	B	128	133	Right-handed alpha
Helix 24	AC6	B	134	136	Right-handed 310
Helix 25	AC7	B	145	149	Right-handed alpha
Helix 26	AC8	B	186	201	Right-handed alpha
Helix 27	AC9	B	216	230	Right-handed alpha
Helix 28	AD1	B	239	242	Right-handed 310
Helix 29	AD2	B	243	254	Right-handed alpha
Helix 30	AD3	B	262	268	Right-handed alpha
Helix 31	AD4	B	287	295	Right-handed alpha
Helix 32	AD5	B	307	311	Right-handed 310
Helix 33	AD6	B	368	375	Right-handed alpha
Helix 34	AD7	B	384	387	Right-handed 310

There are 12 sheets in PDB entry 8G96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	335	339	anti-parallel
Strand 3	A	351	357	anti-parallel
Strand 4	A	389	399	anti-parallel
Strand 5	A	376	378	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	335	339	anti-parallel
Strand 3	A	351	357	anti-parallel
Strand 4	A	389	399	anti-parallel
Strand 5	A	405	410	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	41	45	anti-parallel
Strand 3	A	232	235	parallel
Strand 4	A	207	210	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	76	79	parallel
Strand 3	A	124	127	parallel
Strand 4	A	142	144	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	181	185	anti-parallel
Strand 3	A	364	365	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	261	first strand
Strand 2	A	278	282	parallel
Strand 3	A	300	305	parallel
Strand 4	A	315	318	anti-parallel
Strand 5	A	329	330	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	351	357	anti-parallel
Strand 4	B	389	399	anti-parallel
Strand 5	B	376	378	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	13	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	351	357	anti-parallel
Strand 4	B	389	399	anti-parallel
Strand 5	B	405	410	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	41	45	anti-parallel
Strand 3	B	232	235	parallel
Strand 4	B	207	210	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	76	80	parallel
Strand 3	B	124	127	parallel
Strand 4	B	142	144	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	171	first strand
Strand 2	B	181	185	anti-parallel
Strand 3	B	364	365	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	278	282	parallel
Strand 3	B	300	305	parallel
Strand 4	B	315	318	anti-parallel
Strand 5	B	329	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G96

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G96