Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G9F entry

There are 4 chains in PDB entry 8G9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 339	GLN 1452
B	GLN 159	VAL 598
C	THR 16	LEU 461
D	TYR 6	GLU 409

There are102 helices in PDB entry 8G9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	409	420	Right-handed alpha
Helix 2	AA2	A	420	425	Right-handed alpha
Helix 3	AA3	A	482	492	Right-handed alpha
Helix 4	AA4	A	522	524	Right-handed 310
Helix 5	AA5	A	597	606	Right-handed alpha
Helix 6	AA6	A	614	630	Right-handed alpha
Helix 7	AA7	A	642	655	Right-handed alpha
Helix 8	AA8	A	658	663	Right-handed 310
Helix 9	AA9	A	679	683	Right-handed 310
Helix 10	AB1	A	693	701	Right-handed alpha
Helix 11	AB2	A	707	716	Right-handed alpha
Helix 12	AB3	A	724	729	Right-handed alpha
Helix 13	AB4	A	730	733	Right-handed 310
Helix 14	AB5	A	734	760	Right-handed alpha
Helix 15	AB6	A	760	773	Right-handed alpha
Helix 16	AB7	A	775	782	Right-handed alpha
Helix 17	AB8	A	787	799	Right-handed alpha
Helix 18	AB9	A	862	872	Right-handed alpha
Helix 19	AC1	A	905	927	Right-handed alpha
Helix 20	AC2	A	931	952	Right-handed alpha
Helix 21	AC3	A	953	958	Right-handed alpha
Helix 22	AC4	A	965	990	Right-handed alpha
Helix 23	AC5	A	1010	1029	Right-handed alpha
Helix 24	AC6	A	1081	1096	Right-handed alpha
Helix 25	AC7	A	1100	1121	Right-handed alpha
Helix 26	AC8	A	1125	1130	Right-handed 310
Helix 27	AC9	A	1138	1142	Right-handed 310
Helix 28	AD1	A	1144	1147	Right-handed 310
Helix 29	AD2	A	1148	1161	Right-handed alpha
Helix 30	AD3	A	1190	1198	Right-handed alpha
Helix 31	AD4	A	1203	1210	Right-handed alpha
Helix 32	AD5	A	1211	1221	Right-handed alpha
Helix 33	AD6	A	1227	1236	Right-handed alpha
Helix 34	AD7	A	1238	1242	Right-handed 310
Helix 35	AD8	A	1252	1258	Right-handed alpha
Helix 36	AD9	A	1260	1264	Right-handed 310
Helix 37	AE1	A	1265	1270	Right-handed alpha
Helix 38	AE2	A	1296	1300	Right-handed 310
Helix 39	AE3	A	1304	1306	Right-handed 310
Helix 40	AE4	A	1315	1318	Right-handed 310
Helix 41	AE5	A	1319	1340	Right-handed alpha
Helix 42	AE6	A	1381	1395	Right-handed alpha
Helix 43	AE7	A	1397	1404	Right-handed alpha
Helix 44	AE8	A	1407	1415	Right-handed alpha
Helix 45	AE9	A	1419	1439	Right-handed alpha
Helix 46	AF1	A	1447	1451	Right-handed alpha
Helix 47	AF2	B	212	236	Right-handed alpha
Helix 48	AF3	B	275	280	Right-handed alpha
Helix 49	AF4	B	331	335	Right-handed 310
Helix 50	AF5	B	357	371	Right-handed alpha
Helix 51	AF6	B	386	391	Right-handed alpha
Helix 52	AF7	B	397	413	Right-handed alpha
Helix 53	AF8	B	475	482	Right-handed alpha
Helix 54	AF9	B	494	506	Right-handed alpha
Helix 55	AG1	B	521	529	Right-handed alpha
Helix 56	AG2	C	41	65	Right-handed alpha
Helix 57	AG3	C	69	84	Right-handed alpha
Helix 58	AG4	C	95	116	Right-handed alpha
Helix 59	AG5	C	119	140	Right-handed alpha
Helix 60	AG6	C	142	153	Right-handed alpha
Helix 61	AG7	C	161	168	Right-handed alpha
Helix 62	AG8	C	168	176	Right-handed alpha
Helix 63	AG9	C	180	186	Right-handed alpha
Helix 64	AH1	C	197	202	Right-handed alpha
Helix 65	AH2	C	219	242	Right-handed alpha
Helix 66	AH3	C	243	248	Right-handed alpha
Helix 67	AH4	C	249	251	Right-handed 310
Helix 68	AH5	C	252	257	Right-handed alpha
Helix 69	AH6	C	258	262	Right-handed 310
Helix 70	AH7	C	278	289	Right-handed alpha
Helix 71	AH8	C	291	304	Right-handed alpha
Helix 72	AH9	C	308	323	Right-handed alpha
Helix 73	AI1	C	325	339	Right-handed alpha
Helix 74	AI2	C	343	350	Right-handed alpha
Helix 75	AI3	C	351	359	Right-handed alpha
Helix 76	AI4	C	372	379	Right-handed alpha
Helix 77	AI5	C	390	395	Right-handed alpha
Helix 78	AI6	C	396	407	Right-handed alpha
Helix 79	AI7	C	410	423	Right-handed alpha
Helix 80	AI8	C	425	438	Right-handed alpha
Helix 81	AI9	C	449	461	Right-handed alpha
Helix 82	AJ1	D	7	9	Right-handed 310
Helix 83	AJ2	D	10	22	Right-handed alpha
Helix 84	AJ3	D	24	34	Right-handed alpha
Helix 85	AJ4	D	35	37	Right-handed 310
Helix 86	AJ5	D	64	76	Right-handed alpha
Helix 87	AJ6	D	89	96	Right-handed 310
Helix 88	AJ7	D	115	121	Right-handed 310
Helix 89	AJ8	D	133	151	Right-handed alpha
Helix 90	AJ9	D	173	178	Right-handed alpha
Helix 91	AK1	D	180	192	Right-handed alpha
Helix 92	AK2	D	211	230	Right-handed alpha
Helix 93	AK3	D	238	248	Right-handed alpha
Helix 94	AK4	D	250	263	Right-handed alpha
Helix 95	AK5	D	266	281	Right-handed alpha
Helix 96	AK6	D	286	289	Right-handed 310
Helix 97	AK7	D	290	301	Right-handed alpha
Helix 98	AK8	D	305	311	Right-handed alpha
Helix 99	AK9	D	335	341	Right-handed 310
Helix 100	AL1	D	348	357	Right-handed alpha
Helix 101	AL2	D	381	386	Right-handed 310
Helix 102	AL3	D	388	409	Right-handed alpha

There are 21 sheets in PDB entry 8G9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	520	first strand
Strand 2	A	372	380	parallel
Strand 3	A	359	367	anti-parallel
Strand 4	A	340	350	anti-parallel
Strand 5	A	497	502	anti-parallel
Strand 6	A	526	528	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	438	first strand
Strand 2	A	449	457	anti-parallel
Strand 3	A	385	391	anti-parallel
Strand 4	A	473	477	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	402	407	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	612	first strand
Strand 2	A	581	587	parallel
Strand 3	A	555	568	anti-parallel
Strand 4	A	537	548	anti-parallel
Strand 5	A	633	636	parallel
Strand 6	A	689	692	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	851	first strand
Strand 2	A	1035	1047	anti-parallel
Strand 3	A	855	859	anti-parallel
Strand 4	A	1001	1005	anti-parallel
Strand 5	A	993	998	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	851	first strand
Strand 2	A	1035	1047	anti-parallel
Strand 3	A	1050	1060	anti-parallel
Strand 4	A	1063	1071	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1134	first strand
Strand 2	A	1170	1177	anti-parallel
Strand 3	A	1188	1189	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1131	1134	first strand
Strand 2	A	1170	1177	anti-parallel
Strand 3	A	1201	1202	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1276	1279	first strand
Strand 2	A	1286	1289	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1293	1294	first strand
Strand 2	A	1301	1302	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1353	1354	first strand
Strand 2	A	1343	1345	anti-parallel
Strand 3	A	1376	1378	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1444	1446	first strand
Strand 2	C	38	40	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	590	597	anti-parallel
Strand 3	B	570	576	anti-parallel
Strand 4	B	340	346	anti-parallel
Strand 5	B	374	378	parallel
Strand 6	B	419	423	parallel
Strand 7	B	453	455	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	460	464	anti-parallel
Strand 3	B	467	471	anti-parallel
Strand 4	B	537	539	parallel
Strand 5	B	554	558	parallel
Strand 6	B	547	551	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	270	273	anti-parallel
Strand 3	B	247	259	anti-parallel
Strand 4	B	301	308	anti-parallel
Strand 5	B	315	319	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	485	486	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	567	568	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	190	193	anti-parallel
Strand 3	C	212	215	anti-parallel
Strand 4	C	208	209	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	79	86	anti-parallel
Strand 4	D	103	105	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	60	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	79	86	anti-parallel
Strand 4	D	316	317	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	113	first strand
Strand 2	D	166	171	anti-parallel
Strand 3	D	157	161	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9F