Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G9S entry

There are 15 chains in PDB entry 8G9S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 2	GLY 284
C	THR 2	GLY 284
D	THR 2	GLY 284
E	THR 2	GLY 284
F	THR 2	GLY 284
G	THR 2	GLY 284
H	GLY 2	ALA 125
I	GLY 2	ALA 125
J	GLY 2	ALA 125
M	THR 2	GLY 284
N	ARG 2	PRO 206
O	A 1	U 42
K	MET 1	ALA 582
L	GLY 2	ALA 125
A	SER 5	GLU 74

There are103 helices in PDB entry 8G9S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	42	58	Right-handed alpha
Helix 2	AA2	B	72	82	Right-handed alpha
Helix 3	AA3	B	83	89	Right-handed alpha
Helix 4	AA4	B	90	106	Right-handed alpha
Helix 5	AA5	B	106	112	Right-handed alpha
Helix 6	AA6	B	185	193	Right-handed alpha
Helix 7	AA7	B	195	208	Right-handed alpha
Helix 8	AA8	B	209	213	Right-handed 310
Helix 9	AA9	B	239	247	Right-handed alpha
Helix 10	AB1	B	271	275	Right-handed 310
Helix 11	AB2	C	42	58	Right-handed alpha
Helix 12	AB3	C	72	82	Right-handed alpha
Helix 13	AB4	C	93	106	Right-handed alpha
Helix 14	AB5	C	106	112	Right-handed alpha
Helix 15	AB6	C	186	193	Right-handed alpha
Helix 16	AB7	C	195	208	Right-handed alpha
Helix 17	AB8	C	240	245	Right-handed alpha
Helix 18	AB9	C	272	276	Right-handed 310
Helix 19	AC1	D	42	58	Right-handed alpha
Helix 20	AC2	D	72	81	Right-handed alpha
Helix 21	AC3	D	90	106	Right-handed alpha
Helix 22	AC4	D	107	112	Right-handed alpha
Helix 23	AC5	D	188	193	Right-handed alpha
Helix 24	AC6	D	195	208	Right-handed alpha
Helix 25	AC7	D	239	245	Right-handed alpha
Helix 26	AC8	E	42	58	Right-handed alpha
Helix 27	AC9	E	72	84	Right-handed alpha
Helix 28	AD1	E	85	87	Right-handed 310
Helix 29	AD2	E	90	106	Right-handed alpha
Helix 30	AD3	E	106	112	Right-handed alpha
Helix 31	AD4	E	115	119	Right-handed 310
Helix 32	AD5	E	185	193	Right-handed alpha
Helix 33	AD6	E	195	208	Right-handed alpha
Helix 34	AD7	E	209	213	Right-handed 310
Helix 35	AD8	E	239	246	Right-handed alpha
Helix 36	AD9	E	260	262	Right-handed 310
Helix 37	AE1	F	42	58	Right-handed alpha
Helix 38	AE2	F	72	82	Right-handed alpha
Helix 39	AE3	F	93	106	Right-handed alpha
Helix 40	AE4	F	106	112	Right-handed alpha
Helix 41	AE5	F	185	193	Right-handed alpha
Helix 42	AE6	F	195	208	Right-handed alpha
Helix 43	AE7	F	239	246	Right-handed alpha
Helix 44	AE8	G	42	59	Right-handed alpha
Helix 45	AE9	G	73	82	Right-handed alpha
Helix 46	AF1	G	90	106	Right-handed alpha
Helix 47	AF2	G	106	112	Right-handed alpha
Helix 48	AF3	G	185	193	Right-handed alpha
Helix 49	AF4	G	195	213	Right-handed alpha
Helix 50	AF5	G	239	247	Right-handed alpha
Helix 51	AF6	H	9	29	Right-handed alpha
Helix 52	AF7	H	35	47	Right-handed alpha
Helix 53	AF8	H	50	65	Right-handed alpha
Helix 54	AF9	H	68	86	Right-handed alpha
Helix 55	AG1	H	94	113	Right-handed alpha
Helix 56	AG2	H	116	125	Right-handed alpha
Helix 57	AG3	I	9	29	Right-handed alpha
Helix 58	AG4	I	35	47	Right-handed alpha
Helix 59	AG5	I	47	66	Right-handed alpha
Helix 60	AG6	I	68	84	Right-handed alpha
Helix 61	AG7	I	94	114	Right-handed alpha
Helix 62	AG8	I	116	124	Right-handed alpha
Helix 63	AG9	J	9	29	Right-handed alpha
Helix 64	AH1	J	35	47	Right-handed alpha
Helix 65	AH2	J	47	66	Right-handed alpha
Helix 66	AH3	J	68	84	Right-handed alpha
Helix 67	AH4	J	94	114	Right-handed alpha
Helix 68	AH5	J	116	125	Right-handed alpha
Helix 69	AH6	M	42	58	Right-handed alpha
Helix 70	AH7	M	95	106	Right-handed alpha
Helix 71	AH8	M	106	112	Right-handed alpha
Helix 72	AH9	M	185	193	Right-handed alpha
Helix 73	AI1	M	195	208	Right-handed alpha
Helix 74	AI2	M	239	246	Right-handed alpha
Helix 75	AI3	M	260	262	Right-handed 310
Helix 76	AI4	M	272	276	Right-handed 310
Helix 77	AI5	N	30	42	Right-handed alpha
Helix 78	AI6	N	82	85	Right-handed 310
Helix 79	AI7	N	117	132	Right-handed alpha
Helix 80	AI8	K	2	16	Right-handed alpha
Helix 81	AI9	K	243	260	Right-handed alpha
Helix 82	AJ1	K	281	290	Right-handed alpha
Helix 83	AJ2	K	300	303	Right-handed 310
Helix 84	AJ3	K	304	312	Right-handed alpha
Helix 85	AJ4	K	318	322	Right-handed 310
Helix 86	AJ5	K	347	362	Right-handed alpha
Helix 87	AJ6	K	376	383	Right-handed alpha
Helix 88	AJ7	K	393	408	Right-handed alpha
Helix 89	AJ8	K	412	427	Right-handed alpha
Helix 90	AJ9	K	432	448	Right-handed alpha
Helix 91	AK1	K	466	486	Right-handed alpha
Helix 92	AK2	K	492	504	Right-handed alpha
Helix 93	AK3	K	504	523	Right-handed alpha
Helix 94	AK4	K	525	541	Right-handed alpha
Helix 95	AK5	K	551	570	Right-handed alpha
Helix 96	AK6	K	573	582	Right-handed alpha
Helix 97	AK7	L	9	29	Right-handed alpha
Helix 98	AK8	L	35	47	Right-handed alpha
Helix 99	AK9	L	47	66	Right-handed alpha
Helix 100	AL1	L	70	85	Right-handed alpha
Helix 101	AL2	L	95	113	Right-handed alpha
Helix 102	AL3	L	116	125	Right-handed alpha
Helix 103	AL4	A	38	52	Right-handed alpha

There are 38 sheets in PDB entry 8G9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	177	184	anti-parallel
Strand 4	B	7	15	anti-parallel
Strand 5	B	221	230	anti-parallel
Strand 6	B	278	281	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	124	125	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	148	first strand
Strand 2	B	167	170	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	264	267	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	134	136	anti-parallel
Strand 3	C	178	184	anti-parallel
Strand 4	C	129	131	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	134	136	anti-parallel
Strand 3	C	178	184	anti-parallel
Strand 4	C	7	13	anti-parallel
Strand 5	C	225	230	anti-parallel
Strand 6	C	278	281	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	123	125	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	171	172	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	250	first strand
Strand 2	C	265	268	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	134	136	anti-parallel
Strand 3	D	178	184	anti-parallel
Strand 4	D	129	131	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	134	136	anti-parallel
Strand 3	D	178	184	anti-parallel
Strand 4	D	7	15	anti-parallel
Strand 5	D	221	230	anti-parallel
Strand 6	D	278	281	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	123	125	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	146	first strand
Strand 2	D	169	172	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	251	first strand
Strand 2	D	264	268	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	33	first strand
Strand 2	E	38	41	anti-parallel
Strand 3	E	134	136	anti-parallel
Strand 4	E	178	184	anti-parallel
Strand 5	E	7	15	anti-parallel
Strand 6	E	221	222	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	131	first strand
Strand 2	E	178	184	anti-parallel
Strand 3	E	7	15	anti-parallel
Strand 4	E	226	230	anti-parallel
Strand 5	E	278	280	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	251	first strand
Strand 2	E	264	268	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	134	136	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	129	131	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	134	136	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	6	17	anti-parallel
Strand 5	F	220	231	anti-parallel
Strand 6	F	277	280	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	146	first strand
Strand 2	F	169	170	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	250	first strand
Strand 2	F	265	268	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	41	first strand
Strand 2	G	134	136	anti-parallel
Strand 3	G	175	184	anti-parallel
Strand 4	G	129	131	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	41	first strand
Strand 2	G	134	136	anti-parallel
Strand 3	G	175	184	anti-parallel
Strand 4	G	6	16	anti-parallel
Strand 5	G	221	231	anti-parallel
Strand 6	G	277	284	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	146	first strand
Strand 2	G	169	170	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	251	first strand
Strand 2	G	264	267	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	178	183	first strand
Strand 2	M	7	17	anti-parallel
Strand 3	M	220	230	anti-parallel
Strand 4	M	278	280	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	115	first strand
Strand 2	M	124	125	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	143	145	first strand
Strand 2	M	170	172	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	166	167	first strand
Strand 2	A	54	55	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	248	251	first strand
Strand 2	M	264	267	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	62	70	first strand
Strand 2	N	87	108	anti-parallel
Strand 3	N	3	12	anti-parallel
Strand 4	N	148	151	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	62	70	first strand
Strand 2	N	87	108	anti-parallel
Strand 3	N	47	55	anti-parallel
Strand 4	N	200	202	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	170	172	first strand
Strand 2	N	191	193	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	192	194	first strand
Strand 2	K	201	203	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	210	211	first strand
Strand 2	K	219	220	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	324	325	first strand
Strand 2	K	345	346	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	331	332	first strand
Strand 2	K	337	338	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	6	14	anti-parallel
Strand 3	A	65	71	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G9S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9S