Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G9U entry

There are 17 chains in PDB entry 8G9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	ASP 4	ALA 772
A	THR 2	GLY 284
B	THR 2	GLY 284
D	THR 2	GLY 284
C	THR 2	GLY 284
E	THR 2	GLY 284
F	THR 2	GLY 284
I	GLY 2	ALA 125
G	GLY 2	ALA 125
H	MET 1	ALA 582
J	GLY 2	ALA 125
K	G 1	C 43
L	A 7	C 59
M	THR 2	GLY 284
N	ARG 2	PRO 206
O	A 5	A 24
Q	T -5	A 14

There are150 helices in PDB entry 8G9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	22	36	Right-handed alpha
Helix 2	AA2	P	41	50	Right-handed alpha
Helix 3	AA3	P	53	58	Right-handed 310
Helix 4	AA4	P	60	70	Right-handed alpha
Helix 5	AA5	P	91	103	Right-handed alpha
Helix 6	AA6	P	104	121	Right-handed alpha
Helix 7	AA7	P	130	137	Right-handed alpha
Helix 8	AA8	P	137	152	Right-handed alpha
Helix 9	AA9	P	155	159	Right-handed 310
Helix 10	AB1	P	162	174	Right-handed alpha
Helix 11	AB2	P	182	206	Right-handed alpha
Helix 12	AB3	P	214	219	Right-handed alpha
Helix 13	AB4	P	219	224	Right-handed alpha
Helix 14	AB5	P	229	245	Right-handed alpha
Helix 15	AB6	P	254	265	Right-handed alpha
Helix 16	AB7	P	282	298	Right-handed alpha
Helix 17	AB8	P	311	325	Right-handed alpha
Helix 18	AB9	P	366	371	Right-handed alpha
Helix 19	AC1	P	376	379	Right-handed 310
Helix 20	AC2	P	380	385	Right-handed alpha
Helix 21	AC3	P	393	397	Right-handed 310
Helix 22	AC4	P	398	400	Right-handed 310
Helix 23	AC5	P	401	416	Right-handed alpha
Helix 24	AC6	P	454	462	Right-handed alpha
Helix 25	AC7	P	478	488	Right-handed alpha
Helix 26	AC8	P	498	507	Right-handed alpha
Helix 27	AC9	P	523	543	Right-handed alpha
Helix 28	AD1	P	575	586	Right-handed alpha
Helix 29	AD2	P	609	624	Right-handed alpha
Helix 30	AD3	P	633	645	Right-handed alpha
Helix 31	AD4	P	654	660	Right-handed alpha
Helix 32	AD5	P	673	679	Right-handed alpha
Helix 33	AD6	P	713	719	Right-handed alpha
Helix 34	AD7	A	42	58	Right-handed alpha
Helix 35	AD8	A	72	79	Right-handed alpha
Helix 36	AD9	A	80	83	Right-handed 310
Helix 37	AE1	A	90	106	Right-handed alpha
Helix 38	AE2	A	106	112	Right-handed alpha
Helix 39	AE3	A	185	191	Right-handed alpha
Helix 40	AE4	A	195	209	Right-handed alpha
Helix 41	AE5	A	239	245	Right-handed alpha
Helix 42	AE6	A	260	262	Right-handed 310
Helix 43	AE7	A	272	276	Right-handed 310
Helix 44	AE8	B	42	58	Right-handed alpha
Helix 45	AE9	B	73	82	Right-handed alpha
Helix 46	AF1	B	93	106	Right-handed alpha
Helix 47	AF2	B	106	112	Right-handed alpha
Helix 48	AF3	B	185	192	Right-handed alpha
Helix 49	AF4	B	195	213	Right-handed alpha
Helix 50	AF5	B	239	245	Right-handed alpha
Helix 51	AF6	B	260	262	Right-handed 310
Helix 52	AF7	B	272	276	Right-handed 310
Helix 53	AF8	D	42	58	Right-handed alpha
Helix 54	AF9	D	72	81	Right-handed alpha
Helix 55	AG1	D	93	106	Right-handed alpha
Helix 56	AG2	D	106	112	Right-handed alpha
Helix 57	AG3	D	185	193	Right-handed alpha
Helix 58	AG4	D	195	209	Right-handed alpha
Helix 59	AG5	D	210	212	Right-handed 310
Helix 60	AG6	D	239	245	Right-handed alpha
Helix 61	AG7	D	260	262	Right-handed 310
Helix 62	AG8	D	272	276	Right-handed 310
Helix 63	AG9	C	33	36	Right-handed 310
Helix 64	AH1	C	42	58	Right-handed alpha
Helix 65	AH2	C	72	82	Right-handed alpha
Helix 66	AH3	C	90	106	Right-handed alpha
Helix 67	AH4	C	106	112	Right-handed alpha
Helix 68	AH5	C	185	193	Right-handed alpha
Helix 69	AH6	C	195	209	Right-handed alpha
Helix 70	AH7	C	239	245	Right-handed alpha
Helix 71	AH8	C	260	262	Right-handed 310
Helix 72	AH9	C	272	276	Right-handed 310
Helix 73	AI1	E	34	36	Right-handed 310
Helix 74	AI2	E	42	58	Right-handed alpha
Helix 75	AI3	E	72	82	Right-handed alpha
Helix 76	AI4	E	90	106	Right-handed alpha
Helix 77	AI5	E	106	112	Right-handed alpha
Helix 78	AI6	E	186	191	Right-handed alpha
Helix 79	AI7	E	195	209	Right-handed alpha
Helix 80	AI8	E	239	245	Right-handed alpha
Helix 81	AI9	E	260	262	Right-handed 310
Helix 82	AJ1	E	272	276	Right-handed 310
Helix 83	AJ2	F	42	58	Right-handed alpha
Helix 84	AJ3	F	72	81	Right-handed alpha
Helix 85	AJ4	F	90	106	Right-handed alpha
Helix 86	AJ5	F	106	112	Right-handed alpha
Helix 87	AJ6	F	185	191	Right-handed alpha
Helix 88	AJ7	F	195	209	Right-handed alpha
Helix 89	AJ8	F	239	247	Right-handed alpha
Helix 90	AJ9	F	260	262	Right-handed 310
Helix 91	AK1	F	272	276	Right-handed 310
Helix 92	AK2	I	9	29	Right-handed alpha
Helix 93	AK3	I	35	40	Right-handed alpha
Helix 94	AK4	I	40	45	Right-handed alpha
Helix 95	AK5	I	47	58	Right-handed alpha
Helix 96	AK6	I	58	66	Right-handed alpha
Helix 97	AK7	I	68	84	Right-handed alpha
Helix 98	AK8	I	94	114	Right-handed alpha
Helix 99	AK9	I	116	124	Right-handed alpha
Helix 100	AL1	G	9	29	Right-handed alpha
Helix 101	AL2	G	35	40	Right-handed alpha
Helix 102	AL3	G	40	45	Right-handed alpha
Helix 103	AL4	G	47	58	Right-handed alpha
Helix 104	AL5	G	58	66	Right-handed alpha
Helix 105	AL6	G	68	84	Right-handed alpha
Helix 106	AL7	G	94	114	Right-handed alpha
Helix 107	AL8	G	116	124	Right-handed alpha
Helix 108	AL9	H	3	14	Right-handed alpha
Helix 109	AM1	H	73	77	Right-handed 310
Helix 110	AM2	H	100	118	Right-handed alpha
Helix 111	AM3	H	123	131	Right-handed alpha
Helix 112	AM4	H	135	142	Right-handed alpha
Helix 113	AM5	H	145	150	Right-handed alpha
Helix 114	AM6	H	168	172	Right-handed 310
Helix 115	AM7	H	174	183	Right-handed alpha
Helix 116	AM8	H	185	189	Right-handed 310
Helix 117	AM9	H	243	258	Right-handed alpha
Helix 118	AN1	H	282	289	Right-handed alpha
Helix 119	AN2	H	300	314	Right-handed alpha
Helix 120	AN3	H	346	351	Right-handed alpha
Helix 121	AN4	H	351	361	Right-handed alpha
Helix 122	AN5	H	376	382	Right-handed alpha
Helix 123	AN6	H	397	407	Right-handed alpha
Helix 124	AN7	H	412	426	Right-handed alpha
Helix 125	AN8	H	433	447	Right-handed alpha
Helix 126	AN9	H	468	486	Right-handed alpha
Helix 127	AO1	H	492	502	Right-handed alpha
Helix 128	AO2	H	504	523	Right-handed alpha
Helix 129	AO3	H	525	542	Right-handed alpha
Helix 130	AO4	H	551	570	Right-handed alpha
Helix 131	AO5	H	573	581	Right-handed alpha
Helix 132	AO6	J	9	29	Right-handed alpha
Helix 133	AO7	J	35	40	Right-handed alpha
Helix 134	AO8	J	40	45	Right-handed alpha
Helix 135	AO9	J	47	58	Right-handed alpha
Helix 136	AP1	J	58	66	Right-handed alpha
Helix 137	AP2	J	68	84	Right-handed alpha
Helix 138	AP3	J	94	114	Right-handed alpha
Helix 139	AP4	J	116	124	Right-handed alpha
Helix 140	AP5	M	23	27	Right-handed 310
Helix 141	AP6	M	42	58	Right-handed alpha
Helix 142	AP7	M	95	106	Right-handed alpha
Helix 143	AP8	M	106	112	Right-handed alpha
Helix 144	AP9	M	185	193	Right-handed alpha
Helix 145	AQ1	M	195	208	Right-handed alpha
Helix 146	AQ2	M	239	245	Right-handed alpha
Helix 147	AQ3	M	260	262	Right-handed 310
Helix 148	AQ4	M	272	275	Right-handed 310
Helix 149	AQ5	N	30	42	Right-handed alpha
Helix 150	AQ6	N	117	132	Right-handed alpha

There are 44 sheets in PDB entry 8G9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	6	11	first strand
Strand 2	P	17	21	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	273	274	first strand
Strand 2	P	449	450	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	329	331	first strand
Strand 2	P	358	362	parallel
Strand 3	P	303	307	parallel
Strand 4	P	388	391	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	434	435	first strand
Strand 2	P	440	441	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	465	468	first strand
Strand 2	P	596	601	parallel
Strand 3	P	568	572	parallel
Strand 4	P	492	495	parallel
Strand 5	P	550	554	parallel
Strand 6	P	514	518	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	690	691	first strand
Strand 2	P	748	749	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	129	131	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	41	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	176	184	anti-parallel
Strand 4	A	7	17	anti-parallel
Strand 5	A	220	230	anti-parallel
Strand 6	A	278	281	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	124	125	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	169	170	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	264	268	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	38	41	anti-parallel
Strand 4	B	134	139	anti-parallel
Strand 5	B	176	184	anti-parallel
Strand 6	B	129	131	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	38	41	anti-parallel
Strand 4	B	134	139	anti-parallel
Strand 5	B	176	184	anti-parallel
Strand 6	B	6	15	anti-parallel
Strand 7	B	221	231	anti-parallel
Strand 8	B	278	281	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	124	125	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	264	267	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	26	32	anti-parallel
Strand 3	D	39	41	anti-parallel
Strand 4	D	134	136	anti-parallel
Strand 5	D	176	184	anti-parallel
Strand 6	D	129	131	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	26	32	anti-parallel
Strand 3	D	39	41	anti-parallel
Strand 4	D	134	136	anti-parallel
Strand 5	D	176	184	anti-parallel
Strand 6	D	7	15	anti-parallel
Strand 7	D	221	230	anti-parallel
Strand 8	D	278	281	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	115	first strand
Strand 2	D	124	125	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	169	170	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	264	267	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	41	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	7	15	anti-parallel
Strand 5	C	221	230	anti-parallel
Strand 6	C	278	281	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	115	first strand
Strand 2	C	124	125	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	169	170	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	251	first strand
Strand 2	C	264	268	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	22	23	first strand
Strand 2	E	26	32	anti-parallel
Strand 3	E	38	41	anti-parallel
Strand 4	E	134	139	anti-parallel
Strand 5	E	176	181	anti-parallel
Strand 6	E	7	15	anti-parallel
Strand 7	E	221	230	anti-parallel
Strand 8	E	279	281	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	E	124	125	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	183	184	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	146	first strand
Strand 2	E	169	170	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	251	first strand
Strand 2	E	264	268	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	134	136	anti-parallel
Strand 3	F	178	184	anti-parallel
Strand 4	F	129	131	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	134	136	anti-parallel
Strand 3	F	178	184	anti-parallel
Strand 4	F	6	15	anti-parallel
Strand 5	F	221	231	anti-parallel
Strand 6	F	278	281	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	115	first strand
Strand 2	F	124	125	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	146	first strand
Strand 2	F	169	170	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	251	first strand
Strand 2	F	264	267	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	30	first strand
Strand 2	H	59	64	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	45	first strand
Strand 2	H	34	37	anti-parallel
Strand 3	H	160	161	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	263	265	first strand
Strand 2	H	270	275	anti-parallel
Strand 3	H	325	332	anti-parallel
Strand 4	H	337	343	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	130	first strand
Strand 2	M	176	184	anti-parallel
Strand 3	M	135	136	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	130	first strand
Strand 2	M	176	184	anti-parallel
Strand 3	M	6	15	anti-parallel
Strand 4	M	221	231	anti-parallel
Strand 5	M	277	281	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	143	145	first strand
Strand 2	M	170	172	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	247	251	first strand
Strand 2	M	264	268	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	47	53	first strand
Strand 2	N	98	108	anti-parallel
Strand 3	N	3	9	anti-parallel
Strand 4	N	151	152	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	61	64	first strand
Strand 2	N	93	96	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	170	172	first strand
Strand 2	N	191	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9U