Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G9V entry

There are 5 chains in PDB entry 8G9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	ALA 291
B	GLY 1	ASN 286
C	ASN 2	LEU 273
D	GLY 1	GLY 294
E	GLY 1	ILE 167

There are 97 helices in PDB entry 8G9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	19	Right-handed alpha
Helix 2	AA2	A	46	59	Right-handed alpha
Helix 3	AA3	A	69	83	Right-handed alpha
Helix 4	AA4	A	96	111	Right-handed alpha
Helix 5	AA5	A	128	132	Right-handed 310
Helix 6	AA6	A	133	145	Right-handed alpha
Helix 7	AA7	A	145	163	Right-handed alpha
Helix 8	AA8	A	172	176	Right-handed 310
Helix 9	AA9	A	182	206	Right-handed alpha
Helix 10	AB1	A	238	252	Right-handed alpha
Helix 11	AB2	A	262	269	Right-handed alpha
Helix 12	AB3	A	270	273	Right-handed 310
Helix 13	AB4	A	274	290	Right-handed alpha
Helix 14	AB5	B	2	27	Right-handed alpha
Helix 15	AB6	B	46	59	Right-handed alpha
Helix 16	AB7	B	69	83	Right-handed alpha
Helix 17	AB8	B	96	111	Right-handed alpha
Helix 18	AB9	B	128	132	Right-handed 310
Helix 19	AC1	B	133	145	Right-handed alpha
Helix 20	AC2	B	145	163	Right-handed alpha
Helix 21	AC3	B	172	176	Right-handed 310
Helix 22	AC4	B	182	206	Right-handed alpha
Helix 23	AC5	B	238	252	Right-handed alpha
Helix 24	AC6	B	262	271	Right-handed alpha
Helix 25	AC7	B	274	282	Right-handed alpha
Helix 26	AC8	C	3	27	Right-handed alpha
Helix 27	AC9	C	46	59	Right-handed alpha
Helix 28	AD1	C	69	83	Right-handed alpha
Helix 29	AD2	C	96	111	Right-handed alpha
Helix 30	AD3	C	128	132	Right-handed 310
Helix 31	AD4	C	133	145	Right-handed alpha
Helix 32	AD5	C	145	163	Right-handed alpha
Helix 33	AD6	C	172	176	Right-handed 310
Helix 34	AD7	C	182	206	Right-handed alpha
Helix 35	AD8	C	238	252	Right-handed alpha
Helix 36	AD9	C	262	271	Right-handed alpha
Helix 37	AE1	D	2	23	Right-handed alpha
Helix 38	AE2	D	46	59	Right-handed alpha
Helix 39	AE3	D	69	83	Right-handed alpha
Helix 40	AE4	D	96	111	Right-handed alpha
Helix 41	AE5	D	128	132	Right-handed 310
Helix 42	AE6	D	133	145	Right-handed alpha
Helix 43	AE7	D	145	163	Right-handed alpha
Helix 44	AE8	D	172	176	Right-handed 310
Helix 45	AE9	D	182	206	Right-handed alpha
Helix 46	AF1	D	238	252	Right-handed alpha
Helix 47	AF2	D	262	269	Right-handed alpha
Helix 48	AF3	D	270	273	Right-handed 310
Helix 49	AF4	D	274	294	Right-handed alpha
Helix 50	AF5	E	2	27	Right-handed alpha
Helix 51	AF6	E	46	59	Right-handed alpha
Helix 52	AF7	E	69	83	Right-handed alpha
Helix 53	AF8	E	96	111	Right-handed alpha
Helix 54	AF9	E	128	132	Right-handed 310
Helix 55	AG1	E	133	145	Right-handed alpha
Helix 56	AG2	E	145	163	Right-handed alpha
Helix 57	AG3	E	172	176	Right-handed 310
Helix 58	AG4	E	182	206	Right-handed alpha
Helix 59	AG5	E	238	252	Right-handed alpha
Helix 60	AG6	E	262	269	Right-handed alpha
Helix 61	AG7	E	270	273	Right-handed 310
Helix 62	AG8	E	274	289	Right-handed alpha
Helix 63	AG9	E	290	293	Right-handed 310
Helix 64	AH1	F	3	27	Right-handed alpha
Helix 65	AH2	F	46	59	Right-handed alpha
Helix 66	AH3	F	69	83	Right-handed alpha
Helix 67	AH4	F	96	111	Right-handed alpha
Helix 68	AH5	F	128	132	Right-handed 310
Helix 69	AH6	F	133	145	Right-handed alpha
Helix 70	AH7	F	145	163	Right-handed alpha
Helix 71	AH8	F	172	176	Right-handed 310
Helix 72	AH9	F	182	206	Right-handed alpha
Helix 73	AI1	F	238	253	Right-handed alpha
Helix 74	AI2	F	262	268	Right-handed alpha
Helix 75	AI3	G	3	27	Right-handed alpha
Helix 76	AI4	G	46	59	Right-handed alpha
Helix 77	AI5	G	69	83	Right-handed alpha
Helix 78	AI6	G	96	111	Right-handed alpha
Helix 79	AI7	G	128	132	Right-handed 310
Helix 80	AI8	G	133	145	Right-handed alpha
Helix 81	AI9	G	145	162	Right-handed alpha
Helix 82	AJ1	G	172	176	Right-handed 310
Helix 83	AJ2	G	182	206	Right-handed alpha
Helix 84	AJ3	G	239	253	Right-handed alpha
Helix 85	AJ4	G	263	271	Right-handed alpha
Helix 86	AJ5	H	3	27	Right-handed alpha
Helix 87	AJ6	H	46	59	Right-handed alpha
Helix 88	AJ7	H	69	84	Right-handed alpha
Helix 89	AJ8	H	96	111	Right-handed alpha
Helix 90	AJ9	H	128	132	Right-handed 310
Helix 91	AK1	H	133	145	Right-handed alpha
Helix 92	AK2	H	145	163	Right-handed alpha
Helix 93	AK3	H	172	176	Right-handed 310
Helix 94	AK4	H	182	207	Right-handed alpha
Helix 95	AK5	H	239	252	Right-handed alpha
Helix 96	AK6	H	262	269	Right-handed alpha
Helix 97	AK7	H	274	289	Right-handed alpha

There are 9 sheets in PDB entry 8G9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	62	67	parallel
Strand 3	A	38	42	parallel
Strand 4	A	116	119	parallel
Strand 5	A	165	170	parallel
Strand 6	A	211	218	parallel
Strand 7	A	256	259	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	62	66	parallel
Strand 3	B	38	42	parallel
Strand 4	B	116	119	parallel
Strand 5	B	165	170	parallel
Strand 6	B	211	218	parallel
Strand 7	B	256	259	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	91	first strand
Strand 2	C	62	67	parallel
Strand 3	C	38	42	parallel
Strand 4	C	116	119	parallel
Strand 5	C	165	170	parallel
Strand 6	C	211	218	parallel
Strand 7	C	256	259	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	91	first strand
Strand 2	D	62	67	parallel
Strand 3	D	38	42	parallel
Strand 4	D	116	119	parallel
Strand 5	D	165	170	parallel
Strand 6	D	211	218	parallel
Strand 7	D	256	259	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	66	first strand
Strand 2	E	38	42	parallel
Strand 3	E	116	119	parallel
Strand 4	E	165	170	parallel
Strand 5	E	211	218	parallel
Strand 6	E	256	259	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	91	first strand
Strand 2	F	62	67	parallel
Strand 3	F	38	42	parallel
Strand 4	F	116	119	parallel
Strand 5	F	165	170	parallel
Strand 6	F	211	218	parallel
Strand 7	F	256	259	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	66	first strand
Strand 2	G	38	42	parallel
Strand 3	G	116	119	parallel
Strand 4	G	165	170	parallel
Strand 5	G	211	218	parallel
Strand 6	G	257	260	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	88	91	first strand
Strand 2	H	62	67	parallel
Strand 3	H	38	42	parallel
Strand 4	H	116	119	parallel
Strand 5	H	165	170	parallel
Strand 6	H	211	218	parallel
Strand 7	H	256	259	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	221	222	first strand
Strand 2	H	237	238	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9V