Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G9X entry

There are 8 chains in PDB entry 8G9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 512	ASP 664
D	ALA 512	ASP 664
E	ALA 31	VAL 505
G	ALA 31	VAL 505
H	GLU 1	SER 112
L	ASP 1	LEU 106
O	ALA 512	ASP 664
P	ALA 31	VAL 505

There are 37 helices in PDB entry 8G9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	529	534	Right-handed alpha
Helix 2	AA2	B	537	543	Right-handed alpha
Helix 3	AA3	B	572	595	Right-handed alpha
Helix 4	AA4	B	627	636	Right-handed alpha
Helix 5	AA5	B	641	664	Right-handed alpha
Helix 6	AA6	D	529	534	Right-handed alpha
Helix 7	AA7	D	537	543	Right-handed alpha
Helix 8	AA8	D	572	595	Right-handed alpha
Helix 9	AA9	D	627	636	Right-handed alpha
Helix 10	AB1	D	641	664	Right-handed alpha
Helix 11	AB2	E	57	62	Right-handed 310
Helix 12	AB3	E	100	115	Right-handed alpha
Helix 13	AB4	E	122	126	Right-handed 310
Helix 14	AB5	E	335	354	Right-handed alpha
Helix 15	AB6	E	425	429	Right-handed 310
Helix 16	AB7	E	475	480	Right-handed alpha
Helix 17	AB8	G	57	62	Right-handed 310
Helix 18	AB9	G	101	115	Right-handed alpha
Helix 19	AC1	G	122	126	Right-handed 310
Helix 20	AC2	G	335	354	Right-handed alpha
Helix 21	AC3	G	425	429	Right-handed 310
Helix 22	AC4	G	475	480	Right-handed alpha
Helix 23	AC5	H	28	32	Right-handed 310
Helix 24	AC6	H	73	75	Right-handed 310
Helix 25	AC7	H	83	87	Right-handed 310
Helix 26	AC8	L	79	83	Right-handed 310
Helix 27	AC9	O	529	534	Right-handed alpha
Helix 28	AD1	O	537	543	Right-handed alpha
Helix 29	AD2	O	572	595	Right-handed alpha
Helix 30	AD3	O	627	636	Right-handed alpha
Helix 31	AD4	O	641	664	Right-handed alpha
Helix 32	AD5	P	57	62	Right-handed 310
Helix 33	AD6	P	100	115	Right-handed alpha
Helix 34	AD7	P	122	126	Right-handed 310
Helix 35	AD8	P	335	354	Right-handed alpha
Helix 36	AD9	P	425	429	Right-handed 310
Helix 37	AE1	P	475	480	Right-handed alpha

There are 41 sheets in PDB entry 8G9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	604	first strand
Strand 2	G	35	39	anti-parallel
Strand 3	G	495	499	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	604	first strand
Strand 2	P	35	39	anti-parallel
Strand 3	P	495	499	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	499	first strand
Strand 2	E	35	39	anti-parallel
Strand 3	O	603	609	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	86	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	238	239	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	155	first strand
Strand 2	E	176	177	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	162	first strand
Strand 2	E	169	173	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	181	183	first strand
Strand 2	E	191	193	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	447	455	anti-parallel
Strand 3	E	284	294	anti-parallel
Strand 4	E	271	273	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	447	455	anti-parallel
Strand 3	E	466	470	anti-parallel
Strand 4	E	359	361	parallel
Strand 5	E	394	395	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	297	298	first strand
Strand 2	E	443	444	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	312	first strand
Strand 2	E	315	320	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	330	334	first strand
Strand 2	E	413	417	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	378	first strand
Strand 2	E	381	384	anti-parallel
Strand 3	E	419	420	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	86	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	92	first strand
Strand 2	G	238	239	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	155	first strand
Strand 2	G	176	177	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	158	162	first strand
Strand 2	G	169	173	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	181	183	first strand
Strand 2	G	191	193	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	261	first strand
Strand 2	G	447	455	anti-parallel
Strand 3	G	284	294	anti-parallel
Strand 4	G	271	273	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	261	first strand
Strand 2	G	447	455	anti-parallel
Strand 3	G	466	470	anti-parallel
Strand 4	G	359	361	parallel
Strand 5	G	394	395	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	297	298	first strand
Strand 2	G	443	444	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	304	312	first strand
Strand 2	G	315	320	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	330	334	first strand
Strand 2	G	413	417	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	375	378	first strand
Strand 2	G	381	384	anti-parallel
Strand 3	G	419	420	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	58	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	44	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	45	47	first strand
Strand 2	P	486	491	anti-parallel
Strand 3	P	223	228	anti-parallel
Strand 4	P	242	245	anti-parallel
Strand 5	P	84	86	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	91	93	first strand
Strand 2	P	237	239	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	154	155	first strand
Strand 2	P	176	177	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	159	162	first strand
Strand 2	P	169	172	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	181	183	first strand
Strand 2	P	191	193	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	260	261	first strand
Strand 2	P	447	455	anti-parallel
Strand 3	P	284	294	anti-parallel
Strand 4	P	271	273	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	260	261	first strand
Strand 2	P	447	455	anti-parallel
Strand 3	P	466	470	anti-parallel
Strand 4	P	359	361	parallel
Strand 5	P	394	395	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	297	298	first strand
Strand 2	P	443	444	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	304	312	first strand
Strand 2	P	315	320	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	330	334	first strand
Strand 2	P	413	417	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	375	378	first strand
Strand 2	P	381	384	anti-parallel
Strand 3	P	419	420	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9X