Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8G9Z entry

There are 3 chains in PDB entry 8G9Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 11	ALA 491
B	ARG 11	SER 466
C	ARG 11	LYS 339

There are 65 helices in PDB entry 8G9Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	39	Right-handed alpha
Helix 2	AA2	A	47	60	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed 310
Helix 4	AA4	A	81	88	Right-handed alpha
Helix 5	AA5	A	108	130	Right-handed alpha
Helix 6	AA6	A	143	159	Right-handed alpha
Helix 7	AA7	A	172	182	Right-handed alpha
Helix 8	AA8	A	201	213	Right-handed alpha
Helix 9	AA9	A	234	246	Right-handed alpha
Helix 10	AB1	A	259	273	Right-handed alpha
Helix 11	AB2	A	282	287	Right-handed alpha
Helix 12	AB3	A	299	310	Right-handed alpha
Helix 13	AB4	A	316	359	Right-handed alpha
Helix 14	AB5	A	386	398	Right-handed alpha
Helix 15	AB6	A	443	467	Right-handed alpha
Helix 16	AB7	A	479	491	Right-handed alpha
Helix 17	AB8	B	14	39	Right-handed alpha
Helix 18	AB9	B	47	60	Right-handed alpha
Helix 19	AC1	B	61	66	Right-handed 310
Helix 20	AC2	B	81	88	Right-handed alpha
Helix 21	AC3	B	108	130	Right-handed alpha
Helix 22	AC4	B	143	159	Right-handed alpha
Helix 23	AC5	B	172	182	Right-handed alpha
Helix 24	AC6	B	201	213	Right-handed alpha
Helix 25	AC7	B	234	246	Right-handed alpha
Helix 26	AC8	B	259	273	Right-handed alpha
Helix 27	AC9	B	282	287	Right-handed alpha
Helix 28	AD1	B	299	310	Right-handed alpha
Helix 29	AD2	B	316	359	Right-handed alpha
Helix 30	AD3	B	381	386	Right-handed alpha
Helix 31	AD4	B	386	398	Right-handed alpha
Helix 32	AD5	B	443	466	Right-handed alpha
Helix 33	AD6	C	14	39	Right-handed alpha
Helix 34	AD7	C	47	60	Right-handed alpha
Helix 35	AD8	C	61	66	Right-handed 310
Helix 36	AD9	C	81	88	Right-handed alpha
Helix 37	AE1	C	108	130	Right-handed alpha
Helix 38	AE2	C	143	159	Right-handed alpha
Helix 39	AE3	C	172	182	Right-handed alpha
Helix 40	AE4	C	201	213	Right-handed alpha
Helix 41	AE5	C	234	246	Right-handed alpha
Helix 42	AE6	C	259	273	Right-handed alpha
Helix 43	AE7	C	282	287	Right-handed alpha
Helix 44	AE8	C	299	310	Right-handed alpha
Helix 45	AE9	C	316	359	Right-handed alpha
Helix 46	AF1	C	386	398	Right-handed alpha
Helix 47	AF2	C	443	466	Right-handed alpha
Helix 48	AF3	C	478	492	Right-handed alpha
Helix 49	AF4	D	14	39	Right-handed alpha
Helix 50	AF5	D	47	60	Right-handed alpha
Helix 51	AF6	D	61	66	Right-handed 310
Helix 52	AF7	D	81	88	Right-handed alpha
Helix 53	AF8	D	105	107	Right-handed 310
Helix 54	AF9	D	108	130	Right-handed alpha
Helix 55	AG1	D	143	159	Right-handed alpha
Helix 56	AG2	D	172	182	Right-handed alpha
Helix 57	AG3	D	201	213	Right-handed alpha
Helix 58	AG4	D	234	246	Right-handed alpha
Helix 59	AG5	D	259	273	Right-handed alpha
Helix 60	AG6	D	282	287	Right-handed alpha
Helix 61	AG7	D	299	310	Right-handed alpha
Helix 62	AG8	D	316	359	Right-handed alpha
Helix 63	AG9	D	381	386	Right-handed alpha
Helix 64	AH1	D	386	398	Right-handed alpha
Helix 65	AH2	D	443	465	Right-handed alpha

There are 16 sheets in PDB entry 8G9Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	140	first strand
Strand 2	A	293	297	anti-parallel
Strand 3	A	277	281	anti-parallel
Strand 4	A	249	252	parallel
Strand 5	A	217	223	parallel
Strand 6	A	164	168	parallel
Strand 7	A	185	189	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	197	199	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	376	first strand
Strand 2	A	433	437	anti-parallel
Strand 3	A	404	406	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	414	first strand
Strand 2	A	417	420	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	140	first strand
Strand 2	B	293	297	anti-parallel
Strand 3	B	277	281	anti-parallel
Strand 4	B	249	252	parallel
Strand 5	B	217	223	parallel
Strand 6	B	164	168	parallel
Strand 7	B	185	189	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	197	199	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	376	first strand
Strand 2	B	433	437	anti-parallel
Strand 3	B	404	406	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	414	first strand
Strand 2	B	417	420	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	293	297	anti-parallel
Strand 3	C	277	281	anti-parallel
Strand 4	C	249	252	parallel
Strand 5	C	217	223	parallel
Strand 6	C	164	168	parallel
Strand 7	C	185	189	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	194	first strand
Strand 2	C	197	199	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	376	first strand
Strand 2	C	433	437	anti-parallel
Strand 3	C	404	406	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	C	417	419	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	140	first strand
Strand 2	D	293	297	anti-parallel
Strand 3	D	277	281	anti-parallel
Strand 4	D	249	252	parallel
Strand 5	D	217	223	parallel
Strand 6	D	164	168	parallel
Strand 7	D	185	189	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	197	199	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	376	first strand
Strand 2	D	433	437	anti-parallel
Strand 3	D	404	406	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	414	first strand
Strand 2	D	417	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8G9Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8G9Z