Analysis of interatomic Contacts of Structural Units in PDB entry:
8GA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GA8 entry

There are 10 chains in PDB entry 8GA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	LEU 11	ASP 327
A	ASN 659	ILE 1317
J	PHE 104	LYS 193
L	ASN 12	LEU 153
M	ASN 21	LEU 384
G	PRO 221	GLN 405
B	MET 1	THR 383
E	VAL 2	THR 383
K	LEU 64	GLN 274
D	ASN 659	ILE 1317

There are109 helices in PDB entry 8GA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	11	35	Right-handed alpha
Helix 2	AA2	H	35	56	Right-handed alpha
Helix 3	AA3	H	59	117	Right-handed alpha
Helix 4	AA4	H	300	316	Right-handed alpha
Helix 5	AA5	A	660	677	Right-handed alpha
Helix 6	AA6	A	678	694	Right-handed alpha
Helix 7	AA7	A	698	707	Right-handed alpha
Helix 8	AA8	A	713	724	Right-handed alpha
Helix 9	AA9	A	759	764	Right-handed alpha
Helix 10	AB1	A	772	777	Right-handed alpha
Helix 11	AB2	A	803	839	Right-handed alpha
Helix 12	AB3	A	840	841	Right-handed 310
Helix 13	AB4	A	842	846	Right-handed 310
Helix 14	AB5	A	861	871	Right-handed alpha
Helix 15	AB6	A	875	886	Right-handed alpha
Helix 16	AB7	A	886	922	Right-handed alpha
Helix 17	AB8	A	923	929	Right-handed alpha
Helix 18	AB9	A	934	943	Right-handed alpha
Helix 19	AC1	A	944	961	Right-handed alpha
Helix 20	AC2	A	983	999	Right-handed alpha
Helix 21	AC3	A	1003	1023	Right-handed alpha
Helix 22	AC4	A	1066	1070	Right-handed alpha
Helix 23	AC5	A	1070	1082	Right-handed alpha
Helix 24	AC6	A	1141	1163	Right-handed alpha
Helix 25	AC7	A	1164	1175	Right-handed alpha
Helix 26	AC8	A	1189	1194	Right-handed alpha
Helix 27	AC9	A	1202	1216	Right-handed alpha
Helix 28	AD1	A	1220	1233	Right-handed alpha
Helix 29	AD2	A	1241	1259	Right-handed alpha
Helix 30	AD3	A	1259	1274	Right-handed alpha
Helix 31	AD4	A	1279	1294	Right-handed alpha
Helix 32	AD5	J	108	120	Right-handed alpha
Helix 33	AD6	J	128	135	Right-handed alpha
Helix 34	AD7	J	138	141	Right-handed 310
Helix 35	AD8	J	142	148	Right-handed alpha
Helix 36	AD9	J	158	173	Right-handed alpha
Helix 37	AE1	J	176	191	Right-handed alpha
Helix 38	AE2	L	13	39	Right-handed alpha
Helix 39	AE3	L	42	54	Right-handed alpha
Helix 40	AE4	L	61	114	Right-handed alpha
Helix 41	AE5	L	130	152	Right-handed alpha
Helix 42	AE6	M	22	37	Right-handed alpha
Helix 43	AE7	M	83	87	Right-handed 310
Helix 44	AE8	M	156	160	Right-handed alpha
Helix 45	AE9	M	162	166	Right-handed 310
Helix 46	AF1	M	180	186	Right-handed alpha
Helix 47	AF2	M	188	217	Right-handed alpha
Helix 48	AF3	M	227	232	Right-handed alpha
Helix 49	AF4	M	329	384	Right-handed alpha
Helix 50	AF5	G	222	298	Right-handed alpha
Helix 51	AF6	G	394	404	Right-handed alpha
Helix 52	AF7	B	28	32	Right-handed 310
Helix 53	AF8	B	42	55	Right-handed alpha
Helix 54	AF9	B	56	61	Right-handed 310
Helix 55	AG1	B	70	75	Right-handed alpha
Helix 56	AG2	B	79	89	Right-handed alpha
Helix 57	AG3	B	97	105	Right-handed alpha
Helix 58	AG4	B	115	136	Right-handed alpha
Helix 59	AG5	B	164	175	Right-handed alpha
Helix 60	AG6	B	190	197	Right-handed alpha
Helix 61	AG7	B	226	230	Right-handed 310
Helix 62	AG8	B	243	262	Right-handed alpha
Helix 63	AG9	B	287	300	Right-handed alpha
Helix 64	AH1	B	315	329	Right-handed alpha
Helix 65	AH2	B	343	347	Right-handed 310
Helix 66	AH3	B	365	381	Right-handed alpha
Helix 67	AH4	E	28	32	Right-handed 310
Helix 68	AH5	E	42	56	Right-handed alpha
Helix 69	AH6	E	70	75	Right-handed alpha
Helix 70	AH7	E	79	89	Right-handed alpha
Helix 71	AH8	E	97	105	Right-handed alpha
Helix 72	AH9	E	115	136	Right-handed alpha
Helix 73	AI1	E	164	175	Right-handed alpha
Helix 74	AI2	E	190	196	Right-handed alpha
Helix 75	AI3	E	226	230	Right-handed 310
Helix 76	AI4	E	243	262	Right-handed alpha
Helix 77	AI5	E	287	300	Right-handed alpha
Helix 78	AI6	E	314	330	Right-handed alpha
Helix 79	AI7	E	343	347	Right-handed 310
Helix 80	AI8	E	365	381	Right-handed alpha
Helix 81	AI9	K	70	80	Right-handed alpha
Helix 82	AJ1	K	131	135	Right-handed 310
Helix 83	AJ2	K	144	153	Right-handed alpha
Helix 84	AJ3	K	157	163	Right-handed alpha
Helix 85	AJ4	K	176	184	Right-handed alpha
Helix 86	AJ5	D	662	677	Right-handed alpha
Helix 87	AJ6	D	678	694	Right-handed alpha
Helix 88	AJ7	D	698	710	Right-handed alpha
Helix 89	AJ8	D	713	724	Right-handed alpha
Helix 90	AJ9	D	760	764	Right-handed 310
Helix 91	AK1	D	771	778	Right-handed alpha
Helix 92	AK2	D	801	841	Right-handed alpha
Helix 93	AK3	D	842	848	Right-handed alpha
Helix 94	AK4	D	861	871	Right-handed alpha
Helix 95	AK5	D	872	886	Right-handed alpha
Helix 96	AK6	D	886	924	Right-handed alpha
Helix 97	AK7	D	929	943	Right-handed alpha
Helix 98	AK8	D	944	960	Right-handed alpha
Helix 99	AK9	D	982	999	Right-handed alpha
Helix 100	AL1	D	1003	1023	Right-handed alpha
Helix 101	AL2	D	1066	1070	Right-handed alpha
Helix 102	AL3	D	1141	1160	Right-handed alpha
Helix 103	AL4	D	1161	1163	Right-handed 310
Helix 104	AL5	D	1164	1173	Right-handed alpha
Helix 105	AL6	D	1204	1216	Right-handed alpha
Helix 106	AL7	D	1220	1232	Right-handed alpha
Helix 107	AL8	D	1241	1259	Right-handed alpha
Helix 108	AL9	D	1259	1274	Right-handed alpha
Helix 109	AM1	D	1279	1293	Right-handed alpha

There are 11 sheets in PDB entry 8GA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	750	751	first strand
Strand 2	A	755	757	anti-parallel
Strand 3	A	782	783	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	976	978	first strand
Strand 2	A	1311	1316	anti-parallel
Strand 3	A	1301	1305	anti-parallel
Strand 4	A	1136	1140	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	89	90	first strand
Strand 2	M	99	100	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	62	64	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	206	first strand
Strand 2	B	180	183	parallel
Strand 3	B	266	270	parallel
Strand 4	B	305	308	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	21	24	parallel
Strand 3	E	141	144	parallel
Strand 4	E	305	308	parallel
Strand 5	E	266	270	parallel
Strand 6	E	180	183	parallel
Strand 7	E	203	205	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	90	91	first strand
Strand 2	K	138	143	parallel
Strand 3	K	225	233	anti-parallel
Strand 4	K	264	273	anti-parallel
Strand 5	K	171	172	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	90	91	first strand
Strand 2	K	138	143	parallel
Strand 3	K	225	233	anti-parallel
Strand 4	K	264	273	anti-parallel
Strand 5	K	212	213	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	243	244	first strand
Strand 2	K	247	248	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	755	757	first strand
Strand 2	D	782	784	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	975	978	first strand
Strand 2	D	1311	1316	anti-parallel
Strand 3	D	1301	1306	anti-parallel
Strand 4	D	1135	1140	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GA8