Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GAA entry

There are 6 chains in PDB entry 8GAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 197
C
 MET 199ILE 395
E
 MET 397ILE 593
G
 MET 595ILE 791
I
 MET 793ILE 989
K
 MET 991ILE 1187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8GAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 23Right-handed alpha
Helix 2
AA2
A
24 42Right-handed alpha
Helix 3
AA3
A
44 66Right-handed alpha
Helix 4
AA4
A
69 86Right-handed alpha
Helix 5
AA5
A
88 110Right-handed alpha
Helix 6
AA6
A
115 130Right-handed alpha
Helix 7
AA7
A
132 154Right-handed alpha
Helix 8
AA8
A
157 174Right-handed alpha
Helix 9
AA9
A
176 195Right-handed alpha
Helix 10
AB1
C
200 221Right-handed alpha
Helix 11
AB2
C
222 239Right-handed alpha
Helix 12
AB3
C
242 264Right-handed alpha
Helix 13
AB4
C
268 284Right-handed alpha
Helix 14
AB5
C
286 308Right-handed alpha
Helix 15
AB6
C
313 328Right-handed alpha
Helix 16
AB7
C
330 352Right-handed alpha
Helix 17
AB8
C
355 372Right-handed alpha
Helix 18
AB9
C
374 394Right-handed alpha
Helix 19
AC1
E
398 419Right-handed alpha
Helix 20
AC2
E
420 437Right-handed alpha
Helix 21
AC3
E
440 462Right-handed alpha
Helix 22
AC4
E
466 482Right-handed alpha
Helix 23
AC5
E
484 506Right-handed alpha
Helix 24
AC6
E
511 526Right-handed alpha
Helix 25
AC7
E
528 550Right-handed alpha
Helix 26
AC8
E
554 570Right-handed alpha
Helix 27
AC9
E
572 591Right-handed alpha
Helix 28
AD1
G
596 617Right-handed alpha
Helix 29
AD2
G
618 635Right-handed alpha
Helix 30
AD3
G
638 660Right-handed alpha
Helix 31
AD4
G
664 680Right-handed alpha
Helix 32
AD5
G
682 704Right-handed alpha
Helix 33
AD6
G
706 708Right-handed 310
Helix 34
AD7
G
709 724Right-handed alpha
Helix 35
AD8
G
726 748Right-handed alpha
Helix 36
AD9
G
751 767Right-handed alpha
Helix 37
AE1
G
770 789Right-handed alpha
Helix 38
AE2
I
794 815Right-handed alpha
Helix 39
AE3
I
816 833Right-handed alpha
Helix 40
AE4
I
836 858Right-handed alpha
Helix 41
AE5
I
860 862Right-handed 310
Helix 42
AE6
I
863 878Right-handed alpha
Helix 43
AE7
I
880 903Right-handed alpha
Helix 44
AE8
I
907 922Right-handed alpha
Helix 45
AE9
I
924 946Right-handed alpha
Helix 46
AF1
I
949 965Right-handed alpha
Helix 47
AF2
I
968 987Right-handed alpha
Helix 48
AF3
K
992 1013Right-handed alpha
Helix 49
AF4
K
1014 1031Right-handed alpha
Helix 50
AF5
K
1034 1056Right-handed alpha
Helix 51
AF6
K
1060 1076Right-handed alpha
Helix 52
AF7
K
1078 1100Right-handed alpha
Helix 53
AF8
K
1105 1120Right-handed alpha
Helix 54
AF9
K
1122 1144Right-handed alpha
Helix 55
AG1
K
1147 1163Right-handed alpha
Helix 56
AG2
K
1166 1185Right-handed alpha
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There are no sheets in PDB entry 8GAA
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