Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GAF entry

There are 13 chains in PDB entry 8GAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLY 284
B	THR 2	GLY 284
C	THR 2	GLY 284
D	THR 2	GLY 284
E	THR 2	GLY 284
F	THR 2	GLY 284
G	MET 1	THR 345
H	LEU 350	ALA 582
I	GLY 2	ALA 125
J	GLY 2	ALA 125
K	G 1	C 43
M	THR 2	GLY 284
N	ARG 2	PRO 206

There are 92 helices in PDB entry 8GAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	58	Right-handed alpha
Helix 2	AA2	A	72	78	Right-handed alpha
Helix 3	AA3	A	90	106	Right-handed alpha
Helix 4	AA4	A	106	112	Right-handed alpha
Helix 5	AA5	A	186	193	Right-handed alpha
Helix 6	AA6	A	195	208	Right-handed alpha
Helix 7	AA7	A	239	245	Right-handed alpha
Helix 8	AA8	B	42	58	Right-handed alpha
Helix 9	AA9	B	72	82	Right-handed alpha
Helix 10	AB1	B	93	106	Right-handed alpha
Helix 11	AB2	B	107	112	Right-handed alpha
Helix 12	AB3	B	186	193	Right-handed alpha
Helix 13	AB4	B	195	208	Right-handed alpha
Helix 14	AB5	B	239	245	Right-handed alpha
Helix 15	AB6	B	260	262	Right-handed 310
Helix 16	AB7	C	42	58	Right-handed alpha
Helix 17	AB8	C	72	82	Right-handed alpha
Helix 18	AB9	C	90	106	Right-handed alpha
Helix 19	AC1	C	106	112	Right-handed alpha
Helix 20	AC2	C	186	193	Right-handed alpha
Helix 21	AC3	C	195	208	Right-handed alpha
Helix 22	AC4	C	240	245	Right-handed alpha
Helix 23	AC5	D	42	57	Right-handed alpha
Helix 24	AC6	D	72	82	Right-handed alpha
Helix 25	AC7	D	93	106	Right-handed alpha
Helix 26	AC8	D	107	112	Right-handed alpha
Helix 27	AC9	D	188	193	Right-handed alpha
Helix 28	AD1	D	195	209	Right-handed alpha
Helix 29	AD2	D	239	245	Right-handed alpha
Helix 30	AD3	D	260	262	Right-handed 310
Helix 31	AD4	E	23	27	Right-handed 310
Helix 32	AD5	E	42	58	Right-handed alpha
Helix 33	AD6	E	72	82	Right-handed alpha
Helix 34	AD7	E	90	106	Right-handed alpha
Helix 35	AD8	E	106	112	Right-handed alpha
Helix 36	AD9	E	186	191	Right-handed alpha
Helix 37	AE1	E	195	208	Right-handed alpha
Helix 38	AE2	E	239	245	Right-handed alpha
Helix 39	AE3	E	260	262	Right-handed 310
Helix 40	AE4	F	42	57	Right-handed alpha
Helix 41	AE5	F	72	81	Right-handed alpha
Helix 42	AE6	F	90	106	Right-handed alpha
Helix 43	AE7	F	106	112	Right-handed alpha
Helix 44	AE8	F	186	191	Right-handed alpha
Helix 45	AE9	F	195	208	Right-handed alpha
Helix 46	AF1	F	239	247	Right-handed alpha
Helix 47	AF2	G	3	15	Right-handed alpha
Helix 48	AF3	G	84	88	Right-handed 310
Helix 49	AF4	G	98	118	Right-handed alpha
Helix 50	AF5	G	122	134	Right-handed alpha
Helix 51	AF6	G	136	142	Right-handed alpha
Helix 52	AF7	G	145	149	Right-handed 310
Helix 53	AF8	G	174	184	Right-handed alpha
Helix 54	AF9	G	185	189	Right-handed 310
Helix 55	AG1	G	243	257	Right-handed alpha
Helix 56	AG2	H	351	359	Right-handed alpha
Helix 57	AG3	H	376	383	Right-handed alpha
Helix 58	AG4	H	400	406	Right-handed alpha
Helix 59	AG5	H	412	427	Right-handed alpha
Helix 60	AG6	H	433	438	Right-handed alpha
Helix 61	AG7	H	441	446	Right-handed alpha
Helix 62	AG8	H	467	486	Right-handed alpha
Helix 63	AG9	H	493	502	Right-handed alpha
Helix 64	AH1	H	505	513	Right-handed alpha
Helix 65	AH2	H	515	522	Right-handed alpha
Helix 66	AH3	H	525	542	Right-handed alpha
Helix 67	AH4	H	554	570	Right-handed alpha
Helix 68	AH5	H	573	581	Right-handed alpha
Helix 69	AH6	I	9	29	Right-handed alpha
Helix 70	AH7	I	35	39	Right-handed 310
Helix 71	AH8	I	40	47	Right-handed alpha
Helix 72	AH9	I	48	50	Right-handed 310
Helix 73	AI1	I	51	65	Right-handed alpha
Helix 74	AI2	I	68	84	Right-handed alpha
Helix 75	AI3	I	94	113	Right-handed alpha
Helix 76	AI4	I	117	124	Right-handed alpha
Helix 77	AI5	J	9	29	Right-handed alpha
Helix 78	AI6	J	36	41	Right-handed alpha
Helix 79	AI7	J	47	50	Right-handed 310
Helix 80	AI8	J	51	65	Right-handed alpha
Helix 81	AI9	J	68	84	Right-handed alpha
Helix 82	AJ1	J	94	113	Right-handed alpha
Helix 83	AJ2	J	117	124	Right-handed alpha
Helix 84	AJ3	M	42	59	Right-handed alpha
Helix 85	AJ4	M	95	106	Right-handed alpha
Helix 86	AJ5	M	106	112	Right-handed alpha
Helix 87	AJ6	M	185	193	Right-handed alpha
Helix 88	AJ7	M	195	213	Right-handed alpha
Helix 89	AJ8	M	239	247	Right-handed alpha
Helix 90	AJ9	M	260	262	Right-handed 310
Helix 91	AK1	N	30	42	Right-handed alpha
Helix 92	AK2	N	118	132	Right-handed alpha

There are 32 sheets in PDB entry 8GAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	176	184	anti-parallel
Strand 3	A	7	15	anti-parallel
Strand 4	A	222	231	anti-parallel
Strand 5	A	277	281	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	134	135	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	264	267	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	176	184	anti-parallel
Strand 3	B	135	136	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	176	184	anti-parallel
Strand 3	B	7	17	anti-parallel
Strand 4	B	220	231	anti-parallel
Strand 5	B	277	281	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	29	30	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	149	first strand
Strand 2	B	166	169	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	251	first strand
Strand 2	B	264	267	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	134	136	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	129	131	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	41	first strand
Strand 2	C	134	136	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	7	15	anti-parallel
Strand 5	C	221	231	anti-parallel
Strand 6	C	277	281	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	251	first strand
Strand 2	C	264	268	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	130	first strand
Strand 2	D	176	184	anti-parallel
Strand 3	D	7	15	anti-parallel
Strand 4	D	221	230	anti-parallel
Strand 5	D	278	281	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	134	135	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	251	first strand
Strand 2	D	264	267	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	176	181	anti-parallel
Strand 3	E	6	15	anti-parallel
Strand 4	E	221	231	anti-parallel
Strand 5	E	277	281	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	130	first strand
Strand 2	E	183	184	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	248	251	first strand
Strand 2	E	264	267	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	134	136	anti-parallel
Strand 3	F	178	184	anti-parallel
Strand 4	F	129	130	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	134	136	anti-parallel
Strand 3	F	178	184	anti-parallel
Strand 4	F	6	13	anti-parallel
Strand 5	F	223	231	anti-parallel
Strand 6	F	277	281	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	251	first strand
Strand 2	F	264	267	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	30	first strand
Strand 2	G	59	63	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	47	first strand
Strand 2	G	32	36	anti-parallel
Strand 3	G	158	160	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	211	first strand
Strand 2	G	219	220	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	263	265	first strand
Strand 2	G	270	272	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	329	332	first strand
Strand 2	G	337	341	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	41	first strand
Strand 2	M	134	136	anti-parallel
Strand 3	M	176	184	anti-parallel
Strand 4	M	6	15	anti-parallel
Strand 5	M	221	231	anti-parallel
Strand 6	M	278	281	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	143	145	first strand
Strand 2	M	170	172	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	248	251	first strand
Strand 2	M	264	267	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	151	152	first strand
Strand 2	N	3	9	anti-parallel
Strand 3	N	98	106	anti-parallel
Strand 4	N	49	55	anti-parallel
Strand 5	N	200	202	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	62	63	first strand
Strand 2	N	94	95	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	66	70	first strand
Strand 2	N	87	91	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	170	172	first strand
Strand 2	N	191	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAF