Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GAG entry

There are 5 chains in PDB entry 8GAG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	GLU 3	ASN 340
C	ALA 7	GLU 63
R	PHE 108	MET 411
S	VAL 2	LEU 235

There are 32 helices in PDB entry 8GAG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	24	Right-handed alpha
Helix 2	AA2	A	25	27	Right-handed 310
Helix 3	AA3	A	28	31	Right-handed 310
Helix 4	AA4	A	44	54	Right-handed alpha
Helix 5	AA5	A	207	216	Right-handed 310
Helix 6	AA6	A	227	231	Right-handed 310
Helix 7	AA7	A	241	255	Right-handed alpha
Helix 8	AA8	A	270	279	Right-handed alpha
Helix 9	AA9	A	295	300	Right-handed alpha
Helix 10	AB1	A	301	309	Right-handed alpha
Helix 11	AB2	A	329	351	Right-handed alpha
Helix 12	AB3	B	5	25	Right-handed alpha
Helix 13	AB4	B	29	35	Right-handed alpha
Helix 14	AB5	C	8	24	Right-handed alpha
Helix 15	AB6	C	29	44	Right-handed alpha
Helix 16	AB7	C	45	48	Right-handed 310
Helix 17	AB8	R	112	139	Right-handed alpha
Helix 18	AB9	R	152	179	Right-handed alpha
Helix 19	AC1	R	188	220	Right-handed alpha
Helix 20	AC2	R	223	228	Right-handed alpha
Helix 21	AC3	R	229	246	Right-handed alpha
Helix 22	AC4	R	248	253	Right-handed alpha
Helix 23	AC5	R	274	312	Right-handed alpha
Helix 24	AC6	R	336	356	Right-handed alpha
Helix 25	AC7	R	357	369	Right-handed alpha
Helix 26	AC8	R	372	383	Right-handed alpha
Helix 27	AC9	R	384	397	Right-handed alpha
Helix 28	AD1	R	401	411	Right-handed alpha
Helix 29	AD2	S	28	32	Right-handed 310
Helix 30	AD3	S	52	56	Right-handed 310
Helix 31	AD4	S	87	91	Right-handed 310
Helix 32	AD5	S	208	212	Right-handed 310

There are 14 sheets in PDB entry 8GAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	38	first strand
Strand 2	A	194	200	parallel
Strand 3	A	185	191	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	263	266	parallel
Strand 3	A	320	321	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	294	298	anti-parallel
Strand 3	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	8	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	143	149	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	135	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	174	177	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	135	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GAG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAG