Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GAH entry

There are 2 chains in PDB entry 8GAH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 30LEU 461
B
 LYS 30LEU 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8GAH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 46Right-handed alpha
Helix 2
AA2
A
50 66Right-handed alpha
Helix 3
AA3
A
74 101Right-handed alpha
Helix 4
AA4
A
108 114Right-handed alpha
Helix 5
AA5
A
123 141Right-handed alpha
Helix 6
AA6
A
147 166Right-handed alpha
Helix 7
AA7
A
170 175Right-handed alpha
Helix 8
AA8
A
175 190Right-handed alpha
Helix 9
AA9
A
192 203Right-handed alpha
Helix 10
AB1
A
212 233Right-handed alpha
Helix 11
AB2
A
252 278Right-handed alpha
Helix 12
AB3
A
279 283Right-handed 310
Helix 13
AB4
A
287 305Right-handed alpha
Helix 14
AB5
A
309 313Right-handed 310
Helix 15
AB6
A
319 325Right-handed alpha
Helix 16
AB7
A
330 349Right-handed alpha
Helix 17
AB8
A
356 379Right-handed alpha
Helix 18
AB9
A
380 383Right-handed 310
Helix 19
AC1
A
385 393Right-handed alpha
Helix 20
AC2
A
396 401Right-handed alpha
Helix 21
AC3
A
404 416Right-handed alpha
Helix 22
AC4
A
422 440Right-handed alpha
Helix 23
AC5
A
443 457Right-handed alpha
Helix 24
AC6
B
31 65Right-handed alpha
Helix 25
AC7
B
68 72Right-handed 310
Helix 26
AC8
B
74 79Right-handed alpha
Helix 27
AC9
B
79 100Right-handed alpha
Helix 28
AD1
B
101 105Right-handed 310
Helix 29
AD2
B
108 113Right-handed alpha
Helix 30
AD3
B
126 131Right-handed alpha
Helix 31
AD4
B
132 139Right-handed alpha
Helix 32
AD5
B
148 165Right-handed alpha
Helix 33
AD6
B
171 188Right-handed alpha
Helix 34
AD7
B
192 203Right-handed alpha
Helix 35
AD8
B
212 233Right-handed alpha
Helix 36
AD9
B
248 252Right-handed 310
Helix 37
AE1
B
253 281Right-handed alpha
Helix 38
AE2
B
287 305Right-handed alpha
Helix 39
AE3
B
319 325Right-handed alpha
Helix 40
AE4
B
329 349Right-handed alpha
Helix 41
AE5
B
356 375Right-handed alpha
Helix 42
AE6
B
385 393Right-handed alpha
Helix 43
AE7
B
394 397Right-handed 310
Helix 44
AE8
B
404 413Right-handed alpha
Helix 45
AE9
B
418 420Right-handed 310
Helix 46
AF1
B
421 428Right-handed alpha
Helix 47
AF2
B
433 440Right-handed alpha
Helix 48
AF3
B
443 460Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8GAH.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
B
209 211anti-parallel
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