Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GAN entry

There are 16 chains in PDB entry 8GAN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLY 284
B	THR 2	GLY 284
C	THR 2	GLY 284
D	THR 2	GLY 284
E	THR 2	GLY 284
F	THR 2	GLY 284
G	GLY 2	ALA 125
H	MET 1	ALA 582
I	GLY 2	ALA 125
J	GLY 2	ALA 125
K	G 1	C 43
L	A 7	C 59
M	THR 2	GLY 284
N	ARG 2	PRO 206
O	A 5	A 23
Q	A -6	A 14

There are103 helices in PDB entry 8GAN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	57	Right-handed alpha
Helix 2	AA2	A	72	82	Right-handed alpha
Helix 3	AA3	A	91	106	Right-handed alpha
Helix 4	AA4	A	107	112	Right-handed alpha
Helix 5	AA5	A	186	193	Right-handed alpha
Helix 6	AA6	A	195	208	Right-handed alpha
Helix 7	AA7	A	239	246	Right-handed alpha
Helix 8	AA8	A	260	262	Right-handed 310
Helix 9	AA9	B	24	27	Right-handed 310
Helix 10	AB1	B	42	57	Right-handed alpha
Helix 11	AB2	B	72	82	Right-handed alpha
Helix 12	AB3	B	91	106	Right-handed alpha
Helix 13	AB4	B	107	112	Right-handed alpha
Helix 14	AB5	B	186	193	Right-handed alpha
Helix 15	AB6	B	195	208	Right-handed alpha
Helix 16	AB7	B	239	246	Right-handed alpha
Helix 17	AB8	B	260	262	Right-handed 310
Helix 18	AB9	C	24	27	Right-handed 310
Helix 19	AC1	C	42	57	Right-handed alpha
Helix 20	AC2	C	72	82	Right-handed alpha
Helix 21	AC3	C	91	106	Right-handed alpha
Helix 22	AC4	C	107	112	Right-handed alpha
Helix 23	AC5	C	186	193	Right-handed alpha
Helix 24	AC6	C	195	208	Right-handed alpha
Helix 25	AC7	C	239	246	Right-handed alpha
Helix 26	AC8	C	260	262	Right-handed 310
Helix 27	AC9	D	24	27	Right-handed 310
Helix 28	AD1	D	42	57	Right-handed alpha
Helix 29	AD2	D	72	82	Right-handed alpha
Helix 30	AD3	D	91	106	Right-handed alpha
Helix 31	AD4	D	107	112	Right-handed alpha
Helix 32	AD5	D	186	193	Right-handed alpha
Helix 33	AD6	D	195	208	Right-handed alpha
Helix 34	AD7	D	239	246	Right-handed alpha
Helix 35	AD8	D	260	262	Right-handed 310
Helix 36	AD9	E	23	27	Right-handed 310
Helix 37	AE1	E	42	57	Right-handed alpha
Helix 38	AE2	E	72	82	Right-handed alpha
Helix 39	AE3	E	91	106	Right-handed alpha
Helix 40	AE4	E	107	112	Right-handed alpha
Helix 41	AE5	E	186	193	Right-handed alpha
Helix 42	AE6	E	195	208	Right-handed alpha
Helix 43	AE7	E	239	246	Right-handed alpha
Helix 44	AE8	E	260	262	Right-handed 310
Helix 45	AE9	F	42	57	Right-handed alpha
Helix 46	AF1	F	72	82	Right-handed alpha
Helix 47	AF2	F	91	106	Right-handed alpha
Helix 48	AF3	F	107	112	Right-handed alpha
Helix 49	AF4	F	186	193	Right-handed alpha
Helix 50	AF5	F	195	208	Right-handed alpha
Helix 51	AF6	F	239	246	Right-handed alpha
Helix 52	AF7	F	260	262	Right-handed 310
Helix 53	AF8	G	9	29	Right-handed alpha
Helix 54	AF9	G	40	44	Right-handed 310
Helix 55	AG1	G	47	66	Right-handed alpha
Helix 56	AG2	G	68	84	Right-handed alpha
Helix 57	AG3	G	94	113	Right-handed alpha
Helix 58	AG4	G	117	124	Right-handed alpha
Helix 59	AG5	H	3	14	Right-handed alpha
Helix 60	AG6	H	73	77	Right-handed 310
Helix 61	AG7	H	84	89	Right-handed alpha
Helix 62	AG8	H	98	117	Right-handed alpha
Helix 63	AG9	H	123	132	Right-handed alpha
Helix 64	AH1	H	135	142	Right-handed alpha
Helix 65	AH2	H	145	152	Right-handed alpha
Helix 66	AH3	H	172	183	Right-handed alpha
Helix 67	AH4	H	243	258	Right-handed alpha
Helix 68	AH5	H	282	287	Right-handed alpha
Helix 69	AH6	H	301	314	Right-handed alpha
Helix 70	AH7	H	346	351	Right-handed alpha
Helix 71	AH8	H	351	361	Right-handed alpha
Helix 72	AH9	H	376	382	Right-handed alpha
Helix 73	AI1	H	400	407	Right-handed alpha
Helix 74	AI2	H	412	427	Right-handed alpha
Helix 75	AI3	H	432	447	Right-handed alpha
Helix 76	AI4	H	468	486	Right-handed alpha
Helix 77	AI5	H	492	502	Right-handed alpha
Helix 78	AI6	H	504	523	Right-handed alpha
Helix 79	AI7	H	525	542	Right-handed alpha
Helix 80	AI8	H	551	570	Right-handed alpha
Helix 81	AI9	H	574	581	Right-handed alpha
Helix 82	AJ1	I	9	29	Right-handed alpha
Helix 83	AJ2	I	40	44	Right-handed 310
Helix 84	AJ3	I	47	66	Right-handed alpha
Helix 85	AJ4	I	68	84	Right-handed alpha
Helix 86	AJ5	I	94	113	Right-handed alpha
Helix 87	AJ6	I	117	124	Right-handed alpha
Helix 88	AJ7	J	9	29	Right-handed alpha
Helix 89	AJ8	J	40	44	Right-handed 310
Helix 90	AJ9	J	47	66	Right-handed alpha
Helix 91	AK1	J	68	84	Right-handed alpha
Helix 92	AK2	J	94	113	Right-handed alpha
Helix 93	AK3	J	117	124	Right-handed alpha
Helix 94	AK4	M	24	27	Right-handed 310
Helix 95	AK5	M	42	58	Right-handed alpha
Helix 96	AK6	M	95	105	Right-handed alpha
Helix 97	AK7	M	107	112	Right-handed alpha
Helix 98	AK8	M	185	193	Right-handed alpha
Helix 99	AK9	M	195	209	Right-handed alpha
Helix 100	AL1	M	239	246	Right-handed alpha
Helix 101	AL2	M	260	262	Right-handed 310
Helix 102	AL3	N	30	42	Right-handed alpha
Helix 103	AL4	N	117	132	Right-handed alpha

There are 34 sheets in PDB entry 8GAN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	10	17	anti-parallel
Strand 3	A	220	228	anti-parallel
Strand 4	A	280	281	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	39	41	anti-parallel
Strand 3	A	134	135	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	182	184	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	264	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	10	17	anti-parallel
Strand 3	B	220	228	anti-parallel
Strand 4	B	280	281	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	29	32	anti-parallel
Strand 3	B	39	41	anti-parallel
Strand 4	B	134	135	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	182	184	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	264	268	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	179	first strand
Strand 2	C	10	17	anti-parallel
Strand 3	C	220	228	anti-parallel
Strand 4	C	280	281	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	23	first strand
Strand 2	C	29	32	anti-parallel
Strand 3	C	39	41	anti-parallel
Strand 4	C	134	135	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	182	184	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	251	first strand
Strand 2	C	264	268	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	179	first strand
Strand 2	D	10	17	anti-parallel
Strand 3	D	220	228	anti-parallel
Strand 4	D	280	281	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	29	32	anti-parallel
Strand 3	D	39	41	anti-parallel
Strand 4	D	134	135	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	182	184	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	251	first strand
Strand 2	D	264	268	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	179	first strand
Strand 2	E	10	17	anti-parallel
Strand 3	E	220	228	anti-parallel
Strand 4	E	280	281	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	E	39	41	anti-parallel
Strand 3	E	134	135	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	131	first strand
Strand 2	E	182	184	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	251	first strand
Strand 2	E	264	268	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	179	first strand
Strand 2	F	10	17	anti-parallel
Strand 3	F	220	228	anti-parallel
Strand 4	F	280	281	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	32	first strand
Strand 2	F	39	41	anti-parallel
Strand 3	F	134	135	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	131	first strand
Strand 2	F	182	184	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	251	first strand
Strand 2	F	264	268	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	30	first strand
Strand 2	H	59	64	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	33	36	first strand
Strand 2	H	158	161	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	263	265	first strand
Strand 2	H	270	275	anti-parallel
Strand 3	H	325	332	anti-parallel
Strand 4	H	337	342	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	7	first strand
Strand 2	M	223	231	anti-parallel
Strand 3	M	10	13	anti-parallel
Strand 4	M	178	181	anti-parallel
Strand 5	M	134	136	anti-parallel
Strand 6	M	40	41	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	6	7	first strand
Strand 2	M	223	231	anti-parallel
Strand 3	M	278	281	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	22	23	first strand
Strand 2	M	29	30	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	247	251	first strand
Strand 2	M	264	268	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	23	24	first strand
Strand 2	N	92	108	parallel
Strand 3	N	3	12	anti-parallel
Strand 4	N	150	152	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	62	64	first strand
Strand 2	N	92	108	anti-parallel
Strand 3	N	47	56	anti-parallel
Strand 4	N	200	202	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	69	70	first strand
Strand 2	N	87	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GAN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAN