Analysis of interatomic Contacts of Structural Units in PDB entry:
8GAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GAQ entry

There are 5 chains in PDB entry 8GAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LYS 147
C
 VAL 149LYS 295
E
 VAL 297LYS 443
G
 VAL 445LYS 591
I
 VAL 593LYS 739
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8GAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 15Right-handed alpha
Helix 2
AA2
A
16 34Right-handed alpha
Helix 3
AA3
A
34 48Right-handed alpha
Helix 4
AA4
A
50 66Right-handed alpha
Helix 5
AA5
A
70 83Right-handed alpha
Helix 6
AA6
A
86 99Right-handed alpha
Helix 7
AA7
A
102 116Right-handed alpha
Helix 8
AA8
A
118 134Right-handed alpha
Helix 9
AA9
A
136 146Right-handed alpha
Helix 10
AB1
C
150 163Right-handed alpha
Helix 11
AB2
C
164 182Right-handed alpha
Helix 12
AB3
C
185 197Right-handed alpha
Helix 13
AB4
C
198 212Right-handed alpha
Helix 14
AB5
C
213 215Right-handed 310
Helix 15
AB6
C
216 231Right-handed alpha
Helix 16
AB7
C
232 247Right-handed alpha
Helix 17
AB8
C
252 255Right-handed 310
Helix 18
AB9
C
256 264Right-handed alpha
Helix 19
AC1
C
266 281Right-handed alpha
Helix 20
AC2
C
284 294Right-handed alpha
Helix 21
AC3
E
298 309Right-handed alpha
Helix 22
AC4
E
312 330Right-handed alpha
Helix 23
AC5
E
333 345Right-handed alpha
Helix 24
AC6
E
346 362Right-handed alpha
Helix 25
AC7
E
364 379Right-handed alpha
Helix 26
AC8
E
382 395Right-handed alpha
Helix 27
AC9
E
400 403Right-handed 310
Helix 28
AD1
E
404 412Right-handed alpha
Helix 29
AD2
E
414 430Right-handed alpha
Helix 30
AD3
E
432 442Right-handed alpha
Helix 31
AD4
G
446 459Right-handed alpha
Helix 32
AD5
G
460 477Right-handed alpha
Helix 33
AD6
G
478 480Right-handed 310
Helix 34
AD7
G
481 492Right-handed alpha
Helix 35
AD8
G
494 510Right-handed alpha
Helix 36
AD9
G
512 527Right-handed alpha
Helix 37
AE1
G
530 543Right-handed alpha
Helix 38
AE2
G
548 551Right-handed 310
Helix 39
AE3
G
552 560Right-handed alpha
Helix 40
AE4
G
562 578Right-handed alpha
Helix 41
AE5
G
580 590Right-handed alpha
Helix 42
AE6
I
594 607Right-handed alpha
Helix 43
AE7
I
608 626Right-handed alpha
Helix 44
AE8
I
629 640Right-handed alpha
Helix 45
AE9
I
642 658Right-handed alpha
Helix 46
AF1
I
660 675Right-handed alpha
Helix 47
AF2
I
678 691Right-handed alpha
Helix 48
AF3
I
696 708Right-handed alpha
Helix 49
AF4
I
710 726Right-handed alpha
Helix 50
AF5
I
728 738Right-handed alpha
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There are no sheets in PDB entry 8GAQ
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