Analysis of interatomic Contacts of Structural Units in PDB entry:
8GB1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GB1 entry

There are 4 chains in PDB entry 8GB1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 113	GLY 584
B	THR 114	ASP 583
C	MET 112	GLY 584
D	ASP 113	GLY 584

There are112 helices in PDB entry 8GB1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	137	Right-handed alpha
Helix 2	AA2	A	138	143	Right-handed alpha
Helix 3	AA3	A	144	147	Right-handed 310
Helix 4	AA4	A	150	156	Right-handed 310
Helix 5	AA5	A	163	186	Right-handed alpha
Helix 6	AA6	A	187	190	Right-handed 310
Helix 7	AA7	A	192	206	Right-handed alpha
Helix 8	AA8	A	214	220	Right-handed alpha
Helix 9	AA9	A	220	226	Right-handed alpha
Helix 10	AB1	A	232	248	Right-handed alpha
Helix 11	AB2	A	249	257	Right-handed alpha
Helix 12	AB3	A	260	274	Right-handed alpha
Helix 13	AB4	A	291	300	Right-handed 310
Helix 14	AB5	A	309	324	Right-handed alpha
Helix 15	AB6	A	330	338	Right-handed alpha
Helix 16	AB7	A	355	373	Right-handed alpha
Helix 17	AB8	A	376	394	Right-handed alpha
Helix 18	AB9	A	402	404	Right-handed 310
Helix 19	AC1	A	411	414	Right-handed 310
Helix 20	AC2	A	415	420	Right-handed alpha
Helix 21	AC3	A	421	423	Right-handed 310
Helix 22	AC4	A	424	432	Right-handed alpha
Helix 23	AC5	A	435	437	Right-handed 310
Helix 24	AC6	A	438	450	Right-handed alpha
Helix 25	AC7	A	469	474	Right-handed 310
Helix 26	AC8	A	475	483	Right-handed alpha
Helix 27	AC9	A	494	496	Right-handed 310
Helix 28	AD1	A	514	518	Right-handed 310
Helix 29	AD2	A	558	577	Right-handed alpha
Helix 30	AD3	B	129	137	Right-handed alpha
Helix 31	AD4	B	138	143	Right-handed alpha
Helix 32	AD5	B	144	147	Right-handed 310
Helix 33	AD6	B	150	156	Right-handed 310
Helix 34	AD7	B	163	185	Right-handed alpha
Helix 35	AD8	B	186	190	Right-handed 310
Helix 36	AD9	B	192	206	Right-handed alpha
Helix 37	AE1	B	214	220	Right-handed alpha
Helix 38	AE2	B	220	226	Right-handed alpha
Helix 39	AE3	B	232	248	Right-handed alpha
Helix 40	AE4	B	249	257	Right-handed alpha
Helix 41	AE5	B	260	274	Right-handed alpha
Helix 42	AE6	B	291	300	Right-handed 310
Helix 43	AE7	B	309	324	Right-handed alpha
Helix 44	AE8	B	330	337	Right-handed alpha
Helix 45	AE9	B	355	373	Right-handed alpha
Helix 46	AF1	B	376	394	Right-handed alpha
Helix 47	AF2	B	402	404	Right-handed 310
Helix 48	AF3	B	411	414	Right-handed 310
Helix 49	AF4	B	415	420	Right-handed alpha
Helix 50	AF5	B	421	423	Right-handed 310
Helix 51	AF6	B	424	432	Right-handed alpha
Helix 52	AF7	B	435	437	Right-handed 310
Helix 53	AF8	B	438	451	Right-handed alpha
Helix 54	AF9	B	469	473	Right-handed 310
Helix 55	AG1	B	474	483	Right-handed alpha
Helix 56	AG2	B	494	496	Right-handed 310
Helix 57	AG3	B	558	577	Right-handed alpha
Helix 58	AG4	C	129	137	Right-handed alpha
Helix 59	AG5	C	138	143	Right-handed alpha
Helix 60	AG6	C	144	147	Right-handed 310
Helix 61	AG7	C	150	156	Right-handed 310
Helix 62	AG8	C	163	186	Right-handed alpha
Helix 63	AG9	C	187	190	Right-handed 310
Helix 64	AH1	C	192	206	Right-handed alpha
Helix 65	AH2	C	214	220	Right-handed alpha
Helix 66	AH3	C	220	226	Right-handed alpha
Helix 67	AH4	C	232	248	Right-handed alpha
Helix 68	AH5	C	250	257	Right-handed alpha
Helix 69	AH6	C	260	273	Right-handed alpha
Helix 70	AH7	C	291	300	Right-handed 310
Helix 71	AH8	C	309	324	Right-handed alpha
Helix 72	AH9	C	330	337	Right-handed alpha
Helix 73	AI1	C	355	373	Right-handed alpha
Helix 74	AI2	C	376	394	Right-handed alpha
Helix 75	AI3	C	402	404	Right-handed 310
Helix 76	AI4	C	411	414	Right-handed 310
Helix 77	AI5	C	415	420	Right-handed alpha
Helix 78	AI6	C	421	423	Right-handed 310
Helix 79	AI7	C	424	432	Right-handed alpha
Helix 80	AI8	C	435	437	Right-handed 310
Helix 81	AI9	C	438	451	Right-handed alpha
Helix 82	AJ1	C	469	474	Right-handed 310
Helix 83	AJ2	C	475	483	Right-handed alpha
Helix 84	AJ3	C	494	496	Right-handed 310
Helix 85	AJ4	C	558	576	Right-handed alpha
Helix 86	AJ5	D	129	137	Right-handed alpha
Helix 87	AJ6	D	138	143	Right-handed alpha
Helix 88	AJ7	D	144	147	Right-handed 310
Helix 89	AJ8	D	150	156	Right-handed 310
Helix 90	AJ9	D	163	186	Right-handed alpha
Helix 91	AK1	D	187	190	Right-handed 310
Helix 92	AK2	D	192	206	Right-handed alpha
Helix 93	AK3	D	214	220	Right-handed alpha
Helix 94	AK4	D	220	226	Right-handed alpha
Helix 95	AK5	D	232	249	Right-handed alpha
Helix 96	AK6	D	249	257	Right-handed alpha
Helix 97	AK7	D	260	274	Right-handed alpha
Helix 98	AK8	D	291	300	Right-handed 310
Helix 99	AK9	D	309	324	Right-handed alpha
Helix 100	AL1	D	330	338	Right-handed alpha
Helix 101	AL2	D	355	373	Right-handed alpha
Helix 102	AL3	D	376	395	Right-handed alpha
Helix 103	AL4	D	402	404	Right-handed 310
Helix 104	AL5	D	411	414	Right-handed 310
Helix 105	AL6	D	415	420	Right-handed alpha
Helix 106	AL7	D	421	423	Right-handed 310
Helix 107	AL8	D	424	432	Right-handed alpha
Helix 108	AL9	D	435	437	Right-handed 310
Helix 109	AM1	D	438	451	Right-handed alpha
Helix 110	AM2	D	469	474	Right-handed 310
Helix 111	AM3	D	475	483	Right-handed alpha
Helix 112	AM4	D	560	576	Right-handed alpha

There are 16 sheets in PDB entry 8GB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	120	first strand
Strand 2	A	124	128	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	346	352	anti-parallel
Strand 3	A	520	521	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	406	407	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	548	554	anti-parallel
Strand 3	A	498	504	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	127	128	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	342	first strand
Strand 2	B	347	351	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	406	407	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	460	first strand
Strand 2	B	548	554	anti-parallel
Strand 3	B	498	504	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	120	first strand
Strand 2	C	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	341	first strand
Strand 2	C	348	351	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	406	407	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	460	first strand
Strand 2	C	547	554	anti-parallel
Strand 3	C	498	505	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	124	128	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	343	first strand
Strand 2	D	346	352	anti-parallel
Strand 3	D	520	521	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	400	first strand
Strand 2	D	406	407	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	460	first strand
Strand 2	D	549	554	anti-parallel
Strand 3	D	498	503	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GB1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GB1