Analysis of interatomic Contacts of Structural Units in PDB entry:
8GB3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GB3 entry

There are 3 chains in PDB entry 8GB3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ARG 3	ALA 513
E	ALA 44	VAL 187
F	ALA 45	ALA 134

There are 24 helices in PDB entry 8GB3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	51	61	Right-handed alpha
Helix 2	AA2	D	88	103	Right-handed alpha
Helix 3	AA3	D	104	106	Right-handed 310
Helix 4	AA4	D	123	138	Right-handed alpha
Helix 5	AA5	D	146	156	Right-handed alpha
Helix 6	AA6	D	200	220	Right-handed alpha
Helix 7	AA7	D	227	245	Right-handed alpha
Helix 8	AA8	D	274	288	Right-handed alpha
Helix 9	AA9	D	289	300	Right-handed alpha
Helix 10	AB1	D	319	330	Right-handed alpha
Helix 11	AB2	D	340	342	Right-handed 310
Helix 12	AB3	D	343	357	Right-handed alpha
Helix 13	AB4	D	482	496	Right-handed alpha
Helix 14	AB5	D	501	509	Right-handed alpha
Helix 15	AB6	D	510	512	Right-handed 310
Helix 16	AB7	E	45	79	Right-handed alpha
Helix 17	AB8	E	79	94	Right-handed alpha
Helix 18	AB9	E	95	108	Right-handed alpha
Helix 19	AC1	E	114	129	Right-handed alpha
Helix 20	AC2	F	47	83	Right-handed alpha
Helix 21	AC3	F	83	89	Right-handed alpha
Helix 22	AC4	F	90	107	Right-handed alpha
Helix 23	AC5	F	114	116	Right-handed 310
Helix 24	AC6	F	117	130	Right-handed alpha

There are 6 sheets in PDB entry 8GB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	15	19	anti-parallel
Strand 3	D	4	8	anti-parallel
Strand 4	D	113	116	parallel
Strand 5	D	140	141	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	181	first strand
Strand 2	D	166	170	anti-parallel
Strand 3	D	309	313	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	386	first strand
Strand 2	D	373	377	anti-parallel
Strand 3	D	410	416	anti-parallel
Strand 4	D	426	433	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	400	first strand
Strand 2	D	446	452	anti-parallel
Strand 3	D	458	464	anti-parallel
Strand 4	D	470	473	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	169	first strand
Strand 2	E	183	187	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	174	first strand
Strand 2	E	177	180	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GB3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GB3