Analysis of interatomic Contacts of Structural Units in PDB entry:
8GBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GBB entry

There are 2 chains in PDB entry 8GBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 260
B
 MET 1ALA 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8GBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
63 78Right-handed alpha
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
99 111Right-handed alpha
Helix 6
AA6
A
111 121Right-handed alpha
Helix 7
AA7
A
121 129Right-handed alpha
Helix 8
AA8
A
137 141Right-handed 310
Helix 9
AA9
A
148 170Right-handed alpha
Helix 10
AB1
A
185 193Right-handed alpha
Helix 11
AB2
A
195 204Right-handed alpha
Helix 12
AB3
A
205 207Right-handed 310
Helix 13
AB4
A
214 227Right-handed alpha
Helix 14
AB5
A
228 231Right-handed 310
Helix 15
AB6
A
243 247Right-handed 310
Helix 16
AB7
A
255 260Right-handed 310
Helix 17
AB8
B
17 30Right-handed alpha
Helix 18
AB9
B
41 50Right-handed alpha
Helix 19
AC1
B
63 78Right-handed alpha
Helix 20
AC2
B
94 98Right-handed 310
Helix 21
AC3
B
99 111Right-handed alpha
Helix 22
AC4
B
111 121Right-handed alpha
Helix 23
AC5
B
121 129Right-handed alpha
Helix 24
AC6
B
137 141Right-handed 310
Helix 25
AC7
B
148 169Right-handed alpha
Helix 26
AC8
B
170 172Right-handed 310
Helix 27
AC9
B
185 192Right-handed alpha
Helix 28
AD1
B
195 204Right-handed alpha
Helix 29
AD2
B
205 207Right-handed 310
Helix 30
AD3
B
214 227Right-handed alpha
Helix 31
AD4
B
228 231Right-handed 310
Helix 32
AD5
B
243 247Right-handed 310
Helix 33
AD6
B
255 260Right-handed 310
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There are 2 sheets in PDB entry 8GBB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
33 38parallel
Strand 3
A
9 13parallel
Strand 4
A
83 86parallel
Strand 5
A
131 135parallel
Strand 6
A
174 180parallel
Strand 7
A
237 240parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
33 38parallel
Strand 3
B
9 13parallel
Strand 4
B
83 86parallel
Strand 5
B
131 135parallel
Strand 6
B
174 180parallel
Strand 7
B
237 240parallel
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