Analysis of interatomic Contacts of Structural Units in PDB entry:
8GBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GBE entry

There is 1 chain in PDB entry 8GBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 13MET 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8GBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
31 47Right-handed alpha
Helix 3
AA3
A
50 65Right-handed alpha
Helix 4
AA4
A
67 81Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
88 99Right-handed alpha
Helix 7
AA7
A
107 123Right-handed alpha
Helix 8
AA8
A
125 136Right-handed alpha
Helix 9
AA9
A
138 157Right-handed alpha
Helix 10
AB1
A
168 173Right-handed 310
Helix 11
AB2
A
178 183Right-handed alpha
Helix 12
AB3
A
196 198Right-handed 310
Helix 13
AB4
A
199 217Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8GBE.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
161 166anti-parallel
Strand 3
A
192 195anti-parallel
Strand 4
A
187 189anti-parallel
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