Analysis of interatomic Contacts of Structural Units in PDB entry:
8GBK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GBK entry

There are 8 chains in PDB entry 8GBK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ASP 3	PHE 102
H	ASP 3	LEU 100
B	ASP 3	ASN 99
E	ASP 3	LEU 100
A	ASP 3	GLU 98
C	ASP 3	ALA 97
D	ASP 3	SER 96
F	ASP 3	LYS 94

There are 24 helices in PDB entry 8GBK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	6	21	Right-handed alpha
Helix 2	AA2	G	21	32	Right-handed alpha
Helix 3	AA3	G	74	95	Right-handed alpha
Helix 4	AA4	H	6	21	Right-handed alpha
Helix 5	AA5	H	21	32	Right-handed alpha
Helix 6	AA6	H	74	94	Right-handed alpha
Helix 7	AA7	B	6	21	Right-handed alpha
Helix 8	AA8	B	21	32	Right-handed alpha
Helix 9	AA9	B	74	95	Right-handed alpha
Helix 10	AB1	E	6	21	Right-handed alpha
Helix 11	AB2	E	21	32	Right-handed alpha
Helix 12	AB3	E	74	95	Right-handed alpha
Helix 13	AB4	A	6	21	Right-handed alpha
Helix 14	AB5	A	21	32	Right-handed alpha
Helix 15	AB6	A	74	96	Right-handed alpha
Helix 16	AB7	C	6	20	Right-handed alpha
Helix 17	AB8	C	21	32	Right-handed alpha
Helix 18	AB9	C	74	94	Right-handed alpha
Helix 19	AC1	D	6	21	Right-handed alpha
Helix 20	AC2	D	21	32	Right-handed alpha
Helix 21	AC3	D	74	95	Right-handed alpha
Helix 22	AC4	F	6	21	Right-handed alpha
Helix 23	AC5	F	21	32	Right-handed alpha
Helix 24	AC6	F	74	94	Right-handed alpha

There are 8 sheets in PDB entry 8GBK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	46	first strand
Strand 2	G	50	56	anti-parallel
Strand 3	G	62	67	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	99	101	first strand
Strand 2	C	62	67	parallel
Strand 3	C	50	55	anti-parallel
Strand 4	C	41	46	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	47	first strand
Strand 2	H	50	55	anti-parallel
Strand 3	H	62	65	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	99	first strand
Strand 2	B	60	67	anti-parallel
Strand 3	B	50	57	anti-parallel
Strand 4	B	40	46	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	46	first strand
Strand 2	E	50	56	anti-parallel
Strand 3	E	61	67	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	99	first strand
Strand 2	D	63	67	anti-parallel
Strand 3	D	50	55	anti-parallel
Strand 4	D	41	46	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	50	56	anti-parallel
Strand 3	A	61	67	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	46	first strand
Strand 2	F	50	56	anti-parallel
Strand 3	F	61	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GBK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GBK