Analysis of interatomic Contacts of Structural Units in PDB entry:
8GBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GBL entry

There are 2 chains in PDB entry 8GBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 38ALA 302
B
 SER 38ALA 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8GBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 50Right-handed alpha
Helix 2
AA2
A
58 64Right-handed alpha
Helix 3
AA3
A
87 94Right-handed alpha
Helix 4
AA4
A
94 109Right-handed alpha
Helix 5
AA5
A
110 112Right-handed 310
Helix 6
AA6
A
115 130Right-handed alpha
Helix 7
AA7
A
144 150Right-handed alpha
Helix 8
AA8
A
181 185Right-handed 310
Helix 9
AA9
A
200 204Right-handed 310
Helix 10
AB1
A
228 242Right-handed alpha
Helix 11
AB2
A
256 260Right-handed 310
Helix 12
AB3
A
261 266Right-handed alpha
Helix 13
AB4
A
292 301Right-handed alpha
Helix 14
AB5
B
39 50Right-handed alpha
Helix 15
AB6
B
58 64Right-handed alpha
Helix 16
AB7
B
81 86Right-handed alpha
Helix 17
AB8
B
87 94Right-handed alpha
Helix 18
AB9
B
94 109Right-handed alpha
Helix 19
AC1
B
110 112Right-handed 310
Helix 20
AC2
B
115 130Right-handed alpha
Helix 21
AC3
B
144 150Right-handed alpha
Helix 22
AC4
B
181 185Right-handed 310
Helix 23
AC5
B
200 204Right-handed 310
Helix 24
AC6
B
228 242Right-handed alpha
Helix 25
AC7
B
261 266Right-handed alpha
Helix 26
AC8
B
292 301Right-handed alpha
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There are 5 sheets in PDB entry 8GBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 156first strand
Strand 2
A
134 139parallel
Strand 3
A
52 57parallel
Strand 4
A
244 248parallel
Strand 5
A
271 275parallel
Strand 6
A
287 290parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
80 81anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
216 220anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
134 139parallel
Strand 3
B
52 57parallel
Strand 4
B
244 248parallel
Strand 5
B
271 275parallel
Strand 6
B
287 290parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 174first strand
Strand 2
B
159 166anti-parallel
Strand 3
B
216 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il