Analysis of interatomic Contacts of Structural Units in PDB entry:
8GC2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GC2 entry

There are 4 chains in PDB entry 8GC2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 34	VAL 839
B	VAL 35	VAL 839
C	VAL 35	VAL 839
D	VAL 35	VAL 839

There are111 helices in PDB entry 8GC2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	87	102	Right-handed alpha
Helix 3	AA3	A	111	126	Right-handed alpha
Helix 4	AA4	A	152	168	Right-handed alpha
Helix 5	AA5	A	180	185	Right-handed alpha
Helix 6	AA6	A	185	190	Right-handed alpha
Helix 7	AA7	A	190	195	Right-handed alpha
Helix 8	AA8	A	210	221	Right-handed alpha
Helix 9	AA9	A	231	245	Right-handed alpha
Helix 10	AB1	A	260	264	Right-handed 310
Helix 11	AB2	A	286	299	Right-handed alpha
Helix 12	AB3	A	317	335	Right-handed alpha
Helix 13	AB4	A	355	365	Right-handed alpha
Helix 14	AB5	A	423	428	Right-handed alpha
Helix 15	AB6	A	454	459	Right-handed 310
Helix 16	AB7	A	461	475	Right-handed alpha
Helix 17	AB8	A	499	507	Right-handed alpha
Helix 18	AB9	A	520	527	Right-handed alpha
Helix 19	AC1	A	560	584	Right-handed alpha
Helix 20	AC2	A	631	664	Right-handed alpha
Helix 21	AC3	A	670	677	Right-handed alpha
Helix 22	AC4	A	688	696	Right-handed alpha
Helix 23	AC5	A	699	712	Right-handed alpha
Helix 24	AC6	A	720	731	Right-handed alpha
Helix 25	AC7	A	739	749	Right-handed alpha
Helix 26	AC8	A	774	789	Right-handed alpha
Helix 27	AC9	A	789	799	Right-handed alpha
Helix 28	AD1	A	818	839	Right-handed alpha
Helix 29	AD2	B	51	67	Right-handed alpha
Helix 30	AD3	B	87	102	Right-handed alpha
Helix 31	AD4	B	111	125	Right-handed alpha
Helix 32	AD5	B	152	167	Right-handed alpha
Helix 33	AD6	B	180	185	Right-handed alpha
Helix 34	AD7	B	185	190	Right-handed alpha
Helix 35	AD8	B	190	195	Right-handed alpha
Helix 36	AD9	B	210	221	Right-handed alpha
Helix 37	AE1	B	231	245	Right-handed alpha
Helix 38	AE2	B	286	299	Right-handed alpha
Helix 39	AE3	B	317	335	Right-handed alpha
Helix 40	AE4	B	355	365	Right-handed alpha
Helix 41	AE5	B	413	417	Right-handed 310
Helix 42	AE6	B	424	429	Right-handed 310
Helix 43	AE7	B	461	475	Right-handed alpha
Helix 44	AE8	B	500	508	Right-handed alpha
Helix 45	AE9	B	520	525	Right-handed alpha
Helix 46	AF1	B	551	556	Right-handed alpha
Helix 47	AF2	B	560	584	Right-handed alpha
Helix 48	AF3	B	631	665	Right-handed alpha
Helix 49	AF4	B	688	696	Right-handed alpha
Helix 50	AF5	B	699	712	Right-handed alpha
Helix 51	AF6	B	712	717	Right-handed alpha
Helix 52	AF7	B	720	731	Right-handed alpha
Helix 53	AF8	B	739	749	Right-handed alpha
Helix 54	AF9	B	772	789	Right-handed alpha
Helix 55	AG1	B	789	798	Right-handed alpha
Helix 56	AG2	B	823	836	Right-handed alpha
Helix 57	AG3	C	52	65	Right-handed alpha
Helix 58	AG4	C	87	102	Right-handed alpha
Helix 59	AG5	C	111	126	Right-handed alpha
Helix 60	AG6	C	152	167	Right-handed alpha
Helix 61	AG7	C	179	185	Right-handed alpha
Helix 62	AG8	C	190	195	Right-handed alpha
Helix 63	AG9	C	210	221	Right-handed alpha
Helix 64	AH1	C	231	246	Right-handed alpha
Helix 65	AH2	C	286	301	Right-handed alpha
Helix 66	AH3	C	306	310	Right-handed 310
Helix 67	AH4	C	317	336	Right-handed alpha
Helix 68	AH5	C	355	365	Right-handed alpha
Helix 69	AH6	C	454	457	Right-handed 310
Helix 70	AH7	C	462	475	Right-handed alpha
Helix 71	AH8	C	499	507	Right-handed alpha
Helix 72	AH9	C	520	527	Right-handed alpha
Helix 73	AI1	C	550	555	Right-handed alpha
Helix 74	AI2	C	560	583	Right-handed alpha
Helix 75	AI3	C	631	664	Right-handed alpha
Helix 76	AI4	C	670	677	Right-handed alpha
Helix 77	AI5	C	688	693	Right-handed alpha
Helix 78	AI6	C	699	712	Right-handed alpha
Helix 79	AI7	C	712	716	Right-handed alpha
Helix 80	AI8	C	721	731	Right-handed alpha
Helix 81	AI9	C	739	748	Right-handed alpha
Helix 82	AJ1	C	773	789	Right-handed alpha
Helix 83	AJ2	C	789	799	Right-handed alpha
Helix 84	AJ3	C	822	838	Right-handed alpha
Helix 85	AJ4	D	51	67	Right-handed alpha
Helix 86	AJ5	D	87	102	Right-handed alpha
Helix 87	AJ6	D	111	126	Right-handed alpha
Helix 88	AJ7	D	152	168	Right-handed alpha
Helix 89	AJ8	D	180	185	Right-handed alpha
Helix 90	AJ9	D	185	190	Right-handed alpha
Helix 91	AK1	D	191	194	Right-handed 310
Helix 92	AK2	D	211	221	Right-handed alpha
Helix 93	AK3	D	231	246	Right-handed alpha
Helix 94	AK4	D	269	273	Right-handed 310
Helix 95	AK5	D	286	301	Right-handed alpha
Helix 96	AK6	D	306	310	Right-handed 310
Helix 97	AK7	D	317	336	Right-handed alpha
Helix 98	AK8	D	355	364	Right-handed alpha
Helix 99	AK9	D	413	418	Right-handed alpha
Helix 100	AL1	D	461	474	Right-handed alpha
Helix 101	AL2	D	500	507	Right-handed alpha
Helix 102	AL3	D	560	582	Right-handed alpha
Helix 103	AL4	D	631	663	Right-handed alpha
Helix 104	AL5	D	670	677	Right-handed alpha
Helix 105	AL6	D	688	696	Right-handed alpha
Helix 106	AL7	D	699	712	Right-handed alpha
Helix 107	AL8	D	720	731	Right-handed alpha
Helix 108	AL9	D	739	747	Right-handed alpha
Helix 109	AM1	D	772	789	Right-handed alpha
Helix 110	AM2	D	789	798	Right-handed alpha
Helix 111	AM3	D	822	839	Right-handed alpha

There are 31 sheets in PDB entry 8GC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	80	83	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	129	131	parallel
Strand 3	A	146	148	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	203	first strand
Strand 2	A	171	176	parallel
Strand 3	A	226	229	parallel
Strand 4	A	255	256	parallel
Strand 5	A	277	279	parallel
Strand 6	A	389	395	anti-parallel
Strand 7	A	398	406	anti-parallel
Strand 8	A	410	411	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	373	375	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	436	first strand
Strand 2	A	477	481	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	518	first strand
Strand 2	A	762	767	anti-parallel
Strand 3	A	534	536	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	683	first strand
Strand 2	A	733	738	parallel
Strand 3	A	538	543	anti-parallel
Strand 4	A	752	755	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	38	first strand
Strand 2	B	76	78	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	81	83	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	129	131	parallel
Strand 3	B	146	151	parallel
Strand 4	B	383	384	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	171	176	parallel
Strand 3	B	225	229	parallel
Strand 4	B	255	256	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	370	first strand
Strand 2	B	373	375	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	394	first strand
Strand 2	B	399	406	anti-parallel
Strand 3	B	410	411	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	479	482	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	683	first strand
Strand 2	B	733	738	parallel
Strand 3	B	538	543	anti-parallel
Strand 4	B	752	755	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	80	first strand
Strand 2	C	36	40	parallel
Strand 3	C	105	107	parallel
Strand 4	C	129	131	parallel
Strand 5	C	146	151	parallel
Strand 6	C	383	384	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	203	first strand
Strand 2	C	171	176	parallel
Strand 3	C	225	229	parallel
Strand 4	C	253	256	parallel
Strand 5	C	275	277	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	370	first strand
Strand 2	C	373	375	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	389	395	first strand
Strand 2	C	398	406	anti-parallel
Strand 3	C	410	411	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	432	436	first strand
Strand 2	C	477	481	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	446	first strand
Strand 2	C	459	461	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	532	first strand
Strand 2	C	765	768	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	717	718	first strand
Strand 2	C	683	685	parallel
Strand 3	C	735	738	parallel
Strand 4	C	538	541	anti-parallel
Strand 5	C	754	755	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	83	first strand
Strand 2	D	38	43	parallel
Strand 3	D	105	107	parallel
Strand 4	D	129	131	parallel
Strand 5	D	146	148	parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	203	first strand
Strand 2	D	171	176	parallel
Strand 3	D	225	229	parallel
Strand 4	D	253	256	parallel
Strand 5	D	275	280	parallel
Strand 6	D	389	394	anti-parallel
Strand 7	D	399	406	anti-parallel
Strand 8	D	410	411	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	373	374	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	482	first strand
Strand 2	D	432	437	parallel
Strand 3	D	512	513	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	490	491	first strand
Strand 2	D	498	499	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	529	first strand
Strand 2	D	767	768	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	683	first strand
Strand 2	D	733	738	parallel
Strand 3	D	536	543	anti-parallel
Strand 4	D	752	754	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	683	first strand
Strand 2	D	733	738	parallel
Strand 3	D	536	543	anti-parallel
Strand 4	D	761	762	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GC2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GC2