Analysis of interatomic Contacts of Structural Units in PDB entry:
8GC4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GC4 entry

There are 4 chains in PDB entry 8GC4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 34	VAL 839
B	HIS 34	VAL 839
C	HIS 34	VAL 839
D	HIS 34	VAL 839

There are108 helices in PDB entry 8GC4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	87	102	Right-handed alpha
Helix 3	AA3	A	111	126	Right-handed alpha
Helix 4	AA4	A	152	168	Right-handed alpha
Helix 5	AA5	A	179	185	Right-handed alpha
Helix 6	AA6	A	185	191	Right-handed alpha
Helix 7	AA7	A	192	194	Right-handed 310
Helix 8	AA8	A	210	221	Right-handed alpha
Helix 9	AA9	A	231	246	Right-handed alpha
Helix 10	AB1	A	260	264	Right-handed 310
Helix 11	AB2	A	286	301	Right-handed alpha
Helix 12	AB3	A	317	335	Right-handed alpha
Helix 13	AB4	A	355	364	Right-handed alpha
Helix 14	AB5	A	454	458	Right-handed 310
Helix 15	AB6	A	461	475	Right-handed alpha
Helix 16	AB7	A	500	507	Right-handed alpha
Helix 17	AB8	A	521	527	Right-handed alpha
Helix 18	AB9	A	560	578	Right-handed alpha
Helix 19	AC1	A	632	665	Right-handed alpha
Helix 20	AC2	A	670	677	Right-handed alpha
Helix 21	AC3	A	690	695	Right-handed alpha
Helix 22	AC4	A	699	712	Right-handed alpha
Helix 23	AC5	A	720	731	Right-handed alpha
Helix 24	AC6	A	739	749	Right-handed alpha
Helix 25	AC7	A	773	788	Right-handed alpha
Helix 26	AC8	A	789	800	Right-handed alpha
Helix 27	AC9	A	820	839	Right-handed alpha
Helix 28	AD1	B	51	66	Right-handed alpha
Helix 29	AD2	B	88	102	Right-handed alpha
Helix 30	AD3	B	111	126	Right-handed alpha
Helix 31	AD4	B	152	167	Right-handed alpha
Helix 32	AD5	B	180	185	Right-handed alpha
Helix 33	AD6	B	185	191	Right-handed alpha
Helix 34	AD7	B	192	194	Right-handed 310
Helix 35	AD8	B	210	222	Right-handed alpha
Helix 36	AD9	B	231	246	Right-handed alpha
Helix 37	AE1	B	260	264	Right-handed 310
Helix 38	AE2	B	286	303	Right-handed alpha
Helix 39	AE3	B	306	310	Right-handed 310
Helix 40	AE4	B	317	337	Right-handed alpha
Helix 41	AE5	B	355	364	Right-handed alpha
Helix 42	AE6	B	461	474	Right-handed alpha
Helix 43	AE7	B	499	505	Right-handed alpha
Helix 44	AE8	B	560	579	Right-handed alpha
Helix 45	AE9	B	632	663	Right-handed alpha
Helix 46	AF1	B	671	677	Right-handed alpha
Helix 47	AF2	B	691	696	Right-handed alpha
Helix 48	AF3	B	699	712	Right-handed alpha
Helix 49	AF4	B	720	731	Right-handed alpha
Helix 50	AF5	B	739	749	Right-handed alpha
Helix 51	AF6	B	772	781	Right-handed alpha
Helix 52	AF7	B	781	788	Right-handed alpha
Helix 53	AF8	B	791	795	Right-handed 310
Helix 54	AF9	B	818	839	Right-handed alpha
Helix 55	AG1	C	51	67	Right-handed alpha
Helix 56	AG2	C	87	102	Right-handed alpha
Helix 57	AG3	C	111	126	Right-handed alpha
Helix 58	AG4	C	152	168	Right-handed alpha
Helix 59	AG5	C	178	183	Right-handed 310
Helix 60	AG6	C	185	191	Right-handed alpha
Helix 61	AG7	C	192	194	Right-handed 310
Helix 62	AG8	C	211	222	Right-handed alpha
Helix 63	AG9	C	231	244	Right-handed alpha
Helix 64	AH1	C	260	264	Right-handed 310
Helix 65	AH2	C	286	299	Right-handed alpha
Helix 66	AH3	C	317	336	Right-handed alpha
Helix 67	AH4	C	356	364	Right-handed alpha
Helix 68	AH5	C	455	459	Right-handed 310
Helix 69	AH6	C	461	475	Right-handed alpha
Helix 70	AH7	C	500	507	Right-handed alpha
Helix 71	AH8	C	520	525	Right-handed alpha
Helix 72	AH9	C	551	556	Right-handed alpha
Helix 73	AI1	C	561	581	Right-handed alpha
Helix 74	AI2	C	632	665	Right-handed alpha
Helix 75	AI3	C	670	677	Right-handed alpha
Helix 76	AI4	C	691	696	Right-handed alpha
Helix 77	AI5	C	699	712	Right-handed alpha
Helix 78	AI6	C	721	731	Right-handed alpha
Helix 79	AI7	C	739	749	Right-handed alpha
Helix 80	AI8	C	772	788	Right-handed alpha
Helix 81	AI9	C	789	796	Right-handed alpha
Helix 82	AJ1	C	818	838	Right-handed alpha
Helix 83	AJ2	D	51	67	Right-handed alpha
Helix 84	AJ3	D	88	102	Right-handed alpha
Helix 85	AJ4	D	111	125	Right-handed alpha
Helix 86	AJ5	D	152	167	Right-handed alpha
Helix 87	AJ6	D	180	185	Right-handed alpha
Helix 88	AJ7	D	185	190	Right-handed alpha
Helix 89	AJ8	D	210	221	Right-handed alpha
Helix 90	AJ9	D	231	245	Right-handed alpha
Helix 91	AK1	D	260	264	Right-handed 310
Helix 92	AK2	D	266	270	Right-handed 310
Helix 93	AK3	D	286	298	Right-handed alpha
Helix 94	AK4	D	317	336	Right-handed alpha
Helix 95	AK5	D	355	364	Right-handed alpha
Helix 96	AK6	D	461	474	Right-handed alpha
Helix 97	AK7	D	500	507	Right-handed alpha
Helix 98	AK8	D	520	527	Right-handed alpha
Helix 99	AK9	D	563	581	Right-handed alpha
Helix 100	AL1	D	632	665	Right-handed alpha
Helix 101	AL2	D	671	676	Right-handed alpha
Helix 102	AL3	D	688	696	Right-handed alpha
Helix 103	AL4	D	701	712	Right-handed alpha
Helix 104	AL5	D	723	731	Right-handed alpha
Helix 105	AL6	D	739	749	Right-handed alpha
Helix 106	AL7	D	773	783	Right-handed alpha
Helix 107	AL8	D	789	799	Right-handed alpha
Helix 108	AL9	D	821	838	Right-handed alpha

There are 32 sheets in PDB entry 8GC4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	75	77	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	39	43	parallel
Strand 3	A	106	107	parallel
Strand 4	A	129	131	parallel
Strand 5	A	146	148	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	203	first strand
Strand 2	A	171	176	parallel
Strand 3	A	225	229	parallel
Strand 4	A	253	256	parallel
Strand 5	A	275	280	parallel
Strand 6	A	389	394	anti-parallel
Strand 7	A	399	405	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	369	first strand
Strand 2	A	374	375	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	482	first strand
Strand 2	A	430	437	parallel
Strand 3	A	512	513	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	498	499	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	529	first strand
Strand 2	A	767	768	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	684	first strand
Strand 2	A	733	738	parallel
Strand 3	A	534	543	anti-parallel
Strand 4	A	752	755	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	684	first strand
Strand 2	A	733	738	parallel
Strand 3	A	534	543	anti-parallel
Strand 4	A	761	764	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	83	first strand
Strand 2	B	35	43	parallel
Strand 3	B	106	107	parallel
Strand 4	B	129	131	parallel
Strand 5	B	146	148	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	171	176	parallel
Strand 3	B	226	229	parallel
Strand 4	B	254	256	parallel
Strand 5	B	277	280	parallel
Strand 6	B	390	394	anti-parallel
Strand 7	B	399	401	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	373	374	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	406	first strand
Strand 2	B	410	413	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	436	first strand
Strand 2	B	480	481	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	459	460	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	B	762	766	anti-parallel
Strand 3	B	534	536	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	683	first strand
Strand 2	B	734	738	parallel
Strand 3	B	538	543	anti-parallel
Strand 4	B	752	755	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	75	77	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	83	first strand
Strand 2	C	39	43	parallel
Strand 3	C	106	107	parallel
Strand 4	C	129	131	parallel
Strand 5	C	147	148	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	203	first strand
Strand 2	C	171	176	parallel
Strand 3	C	225	229	parallel
Strand 4	C	253	256	parallel
Strand 5	C	275	280	parallel
Strand 6	C	389	395	anti-parallel
Strand 7	C	398	405	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	370	first strand
Strand 2	C	373	375	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	482	first strand
Strand 2	C	432	437	parallel
Strand 3	C	512	513	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	528	529	first strand
Strand 2	C	767	768	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	762	764	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	540	543	first strand
Strand 2	C	752	755	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	684	first strand
Strand 2	C	733	736	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	83	first strand
Strand 2	D	35	43	parallel
Strand 3	D	106	107	parallel
Strand 4	D	129	131	parallel
Strand 5	D	146	148	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	203	first strand
Strand 2	D	171	176	parallel
Strand 3	D	225	229	parallel
Strand 4	D	253	256	parallel
Strand 5	D	275	280	parallel
Strand 6	D	389	394	anti-parallel
Strand 7	D	399	406	anti-parallel
Strand 8	D	410	413	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	373	374	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	480	482	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	446	first strand
Strand 2	D	459	460	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	683	first strand
Strand 2	D	733	738	parallel
Strand 3	D	538	543	anti-parallel
Strand 4	D	752	755	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GC4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GC4