Analysis of interatomic Contacts of Structural Units in PDB entry:
8GCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GCC entry

There are 4 chains in PDB entry 8GCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 409	SER 1177
B	LEU 409	SER 1177
C	G 2	C 25
D	G 2	C 25

There are 64 helices in PDB entry 8GCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	424	427	Right-handed 310
Helix 2	AA2	A	436	446	Right-handed alpha
Helix 3	AA3	A	447	449	Right-handed 310
Helix 4	AA4	A	450	452	Right-handed 310
Helix 5	AA5	A	470	476	Right-handed alpha
Helix 6	AA6	A	477	488	Right-handed alpha
Helix 7	AA7	A	513	531	Right-handed alpha
Helix 8	AA8	A	531	536	Right-handed alpha
Helix 9	AA9	A	568	580	Right-handed alpha
Helix 10	AB1	A	581	586	Right-handed 310
Helix 11	AB2	A	598	608	Right-handed alpha
Helix 12	AB3	A	609	613	Right-handed 310
Helix 13	AB4	A	621	631	Right-handed alpha
Helix 14	AB5	A	635	648	Right-handed alpha
Helix 15	AB6	A	664	685	Right-handed alpha
Helix 16	AB7	A	693	707	Right-handed alpha
Helix 17	AB8	A	714	725	Right-handed alpha
Helix 18	AB9	A	730	743	Right-handed alpha
Helix 19	AC1	A	783	788	Right-handed alpha
Helix 20	AC2	A	790	795	Right-handed 310
Helix 21	AC3	A	816	822	Right-handed alpha
Helix 22	AC4	A	838	852	Right-handed alpha
Helix 23	AC5	A	901	915	Right-handed alpha
Helix 24	AC6	A	937	948	Right-handed alpha
Helix 25	AC7	A	949	954	Right-handed alpha
Helix 26	AC8	A	979	1025	Right-handed alpha
Helix 27	AC9	A	1034	1045	Right-handed alpha
Helix 28	AD1	A	1104	1111	Right-handed alpha
Helix 29	AD2	A	1118	1122	Right-handed 310
Helix 30	AD3	A	1123	1146	Right-handed alpha
Helix 31	AD4	A	1148	1177	Right-handed alpha
Helix 32	AD5	B	424	427	Right-handed 310
Helix 33	AD6	B	436	446	Right-handed alpha
Helix 34	AD7	B	447	449	Right-handed 310
Helix 35	AD8	B	450	452	Right-handed 310
Helix 36	AD9	B	470	476	Right-handed alpha
Helix 37	AE1	B	477	488	Right-handed alpha
Helix 38	AE2	B	513	531	Right-handed alpha
Helix 39	AE3	B	531	536	Right-handed alpha
Helix 40	AE4	B	568	580	Right-handed alpha
Helix 41	AE5	B	581	586	Right-handed 310
Helix 42	AE6	B	593	597	Right-handed 310
Helix 43	AE7	B	598	608	Right-handed alpha
Helix 44	AE8	B	609	613	Right-handed 310
Helix 45	AE9	B	621	631	Right-handed alpha
Helix 46	AF1	B	635	648	Right-handed alpha
Helix 47	AF2	B	664	685	Right-handed alpha
Helix 48	AF3	B	693	707	Right-handed alpha
Helix 49	AF4	B	714	725	Right-handed alpha
Helix 50	AF5	B	730	743	Right-handed alpha
Helix 51	AF6	B	783	788	Right-handed alpha
Helix 52	AF7	B	790	795	Right-handed 310
Helix 53	AF8	B	816	822	Right-handed alpha
Helix 54	AF9	B	838	852	Right-handed alpha
Helix 55	AG1	B	901	915	Right-handed alpha
Helix 56	AG2	B	937	948	Right-handed alpha
Helix 57	AG3	B	949	954	Right-handed alpha
Helix 58	AG4	B	979	1025	Right-handed alpha
Helix 59	AG5	B	1034	1045	Right-handed alpha
Helix 60	AG6	B	1104	1111	Right-handed alpha
Helix 61	AG7	B	1111	1116	Right-handed alpha
Helix 62	AG8	B	1118	1122	Right-handed 310
Helix 63	AG9	B	1123	1146	Right-handed alpha
Helix 64	AH1	B	1148	1177	Right-handed alpha

There are 15 sheets in PDB entry 8GCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	458	first strand
Strand 2	A	429	433	parallel
Strand 3	A	505	508	parallel
Strand 4	A	541	543	parallel
Strand 5	A	614	615	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	566	first strand
Strand 2	A	549	550	anti-parallel
Strand 3	A	589	590	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	777	780	anti-parallel
Strand 3	A	754	757	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	798	801	first strand
Strand 2	A	804	808	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	873	first strand
Strand 2	A	876	880	anti-parallel
Strand 3	A	957	961	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	885	first strand
Strand 2	A	890	893	anti-parallel
Strand 3	A	932	935	anti-parallel
Strand 4	A	920	923	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	965	968	first strand
Strand 2	A	974	977	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	456	first strand
Strand 2	B	429	431	parallel
Strand 3	B	505	508	parallel
Strand 4	B	541	543	parallel
Strand 5	B	614	615	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	566	first strand
Strand 2	B	549	550	anti-parallel
Strand 3	B	589	590	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	713	first strand
Strand 2	B	777	780	anti-parallel
Strand 3	B	754	757	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	798	801	first strand
Strand 2	B	804	808	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	826	first strand
Strand 2	B	831	834	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	868	873	first strand
Strand 2	B	876	880	anti-parallel
Strand 3	B	957	961	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	885	first strand
Strand 2	B	890	893	anti-parallel
Strand 3	B	932	936	anti-parallel
Strand 4	B	918	923	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	965	968	first strand
Strand 2	B	974	977	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GCC