Analysis of interatomic Contacts of Structural Units in PDB entry:
8GCE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GCE entry

There are 2 chains in PDB entry 8GCE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1	ALA 958
B	GLY 1	GLU 686

There are 22 helices in PDB entry 8GCE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	199	204	Right-handed alpha
Helix 2	AA2	A	910	916	Right-handed alpha
Helix 3	AA3	B	3	9	Right-handed alpha
Helix 4	AA4	B	12	20	Right-handed alpha
Helix 5	AA5	B	40	47	Right-handed alpha
Helix 6	AA6	B	50	52	Right-handed 310
Helix 7	AA7	B	121	123	Right-handed 310
Helix 8	AA8	B	124	132	Right-handed alpha
Helix 9	AA9	B	135	143	Right-handed alpha
Helix 10	AB1	B	169	173	Right-handed 310
Helix 11	AB2	B	200	209	Right-handed alpha
Helix 12	AB3	B	221	232	Right-handed alpha
Helix 13	AB4	B	232	237	Right-handed alpha
Helix 14	AB5	B	258	264	Right-handed 310
Helix 15	AB6	B	281	286	Right-handed 310
Helix 16	AB7	B	292	302	Right-handed alpha
Helix 17	AB8	B	314	319	Right-handed alpha
Helix 18	AB9	B	339	354	Right-handed alpha
Helix 19	AC1	B	493	497	Right-handed 310
Helix 20	AC2	B	534	538	Right-handed 310
Helix 21	AC3	B	612	617	Right-handed alpha
Helix 22	AC4	B	630	635	Right-handed alpha

There are 25 sheets in PDB entry 8GCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	444	448	anti-parallel
Strand 3	A	435	439	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	34	37	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	67	68	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	85	86	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	140	142	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	276	281	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	296	first strand
Strand 2	A	305	310	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	345	348	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	315	first strand
Strand 2	A	323	324	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	364	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	A	388	393	anti-parallel
Strand 4	A	405	408	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	523	first strand
Strand 2	A	544	552	anti-parallel
Strand 3	A	485	494	anti-parallel
Strand 4	A	453	461	anti-parallel
Strand 5	A	585	588	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	481	482	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	536	first strand
Strand 2	A	503	509	anti-parallel
Strand 3	A	565	572	anti-parallel
Strand 4	A	591	596	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	615	first strand
Strand 2	A	631	639	anti-parallel
Strand 3	A	698	707	anti-parallel
Strand 4	A	657	659	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	652	first strand
Strand 2	A	719	724	anti-parallel
Strand 3	A	736	738	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	755	first strand
Strand 2	A	779	787	anti-parallel
Strand 3	A	901	908	anti-parallel
Strand 4	A	814	821	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	825	829	first strand
Strand 2	A	887	895	anti-parallel
Strand 3	A	794	802	anti-parallel
Strand 4	A	923	934	anti-parallel
Strand 5	A	946	954	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	24	26	anti-parallel
Strand 3	B	54	55	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	65	first strand
Strand 2	B	87	92	anti-parallel
Strand 3	B	425	431	parallel
Strand 4	B	411	418	anti-parallel
Strand 5	B	355	360	anti-parallel
Strand 6	B	385	386	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	102	first strand
Strand 2	B	397	403	anti-parallel
Strand 3	B	366	369	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	149	153	anti-parallel
Strand 3	B	112	117	parallel
Strand 4	B	243	248	parallel
Strand 5	B	304	308	parallel
Strand 6	B	328	329	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	502	first strand
Strand 2	B	505	508	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	540	543	first strand
Strand 2	B	546	549	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	582	first strand
Strand 2	B	585	586	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	639	first strand
Strand 2	B	678	679	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	655	658	first strand
Strand 2	B	664	667	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GCE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GCE