Analysis of interatomic Contacts of Structural Units in PDB entry:
8GCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GCM entry

There are 5 chains in PDB entry 8GCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5PHE 354
B
 SER 2ASN 340
C
 SER 8ARG 62
E
 VAL 2LEU 247
R
 ILE 23LEU 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8GCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 29Right-handed alpha
Helix 2
AA2
A
46 53Right-handed alpha
Helix 3
AA3
A
207 212Right-handed alpha
Helix 4
AA4
A
213 215Right-handed 310
Helix 5
AA5
A
243 254Right-handed alpha
Helix 6
AA6
A
273 278Right-handed alpha
Helix 7
AA7
A
295 309Right-handed alpha
Helix 8
AA8
A
330 351Right-handed alpha
Helix 9
AA9
B
3 25Right-handed alpha
Helix 10
AB1
B
29 34Right-handed alpha
Helix 11
AB2
C
10 23Right-handed alpha
Helix 12
AB3
C
31 42Right-handed alpha
Helix 13
AB4
C
44 48Right-handed 310
Helix 14
AB5
E
28 32Right-handed 310
Helix 15
AB6
E
62 65Right-handed 310
Helix 16
AB7
R
24 45Right-handed alpha
Helix 17
AB8
R
46 50Right-handed 310
Helix 18
AB9
R
54 72Right-handed alpha
Helix 19
AC1
R
73 77Right-handed 310
Helix 20
AC2
R
91 106Right-handed alpha
Helix 21
AC3
R
107 114Right-handed alpha
Helix 22
AC4
R
115 120Right-handed alpha
Helix 23
AC5
R
123 130Right-handed alpha
Helix 24
AC6
R
134 156Right-handed alpha
Helix 25
AC7
R
184 219Right-handed alpha
Helix 26
AC8
R
266 284Right-handed alpha
Helix 27
AC9
R
285 298Right-handed alpha
Helix 28
AD1
R
312 319Right-handed alpha
Helix 29
AD2
R
320 325Right-handed alpha
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There are 15 sheets in PDB entry 8GCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
197 200anti-parallel
Strand 3
A
36 40parallel
Strand 4
A
220 226parallel
Strand 5
A
263 264parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
197 200anti-parallel
Strand 3
A
36 40parallel
Strand 4
A
220 226parallel
Strand 5
A
267 269parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
89 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 105first strand
Strand 2
B
111 114anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
134 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 153first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
166 168anti-parallel
Strand 4
B
178 180anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 191first strand
Strand 2
B
200 203anti-parallel
Strand 3
B
207 210anti-parallel
Strand 4
B
220 222anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
241 245anti-parallel
Strand 3
B
250 253anti-parallel
Strand 4
B
260 263anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
284 288anti-parallel
Strand 3
B
294 298anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 7first strand
Strand 2
E
19 22anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 35first strand
Strand 2
E
97 99anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 47first strand
Strand 2
E
37 39anti-parallel
Strand 3
E
92 94anti-parallel
Strand 4
E
115 117anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 50first strand
Strand 2
E
59 60anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
141 142first strand
Strand 2
E
155 160anti-parallel
Strand 3
E
211 216anti-parallel
Strand 4
E
203 208anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
146 148first strand
Strand 2
E
243 246parallel
Strand 3
E
225 231anti-parallel
Strand 4
E
174 179anti-parallel
Strand 5
E
186 189anti-parallel
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