Analysis of interatomic Contacts of Structural Units in PDB entry:
8GCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GCP entry

There are 5 chains in PDB entry 8GCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5PHE 354
B
 LEU 4ASN 340
C
 SER 8ARG 62
E
 VAL 2LEU 245
R
 PRO 20SER 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8GCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 31Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
207 216Right-handed 310
Helix 4
AA4
A
242 255Right-handed alpha
Helix 5
AA5
A
270 281Right-handed alpha
Helix 6
AA6
A
282 286Right-handed 310
Helix 7
AA7
A
295 309Right-handed alpha
Helix 8
AA8
A
331 341Right-handed alpha
Helix 9
AA9
A
342 352Right-handed alpha
Helix 10
AB1
B
5 24Right-handed alpha
Helix 11
AB2
C
9 24Right-handed alpha
Helix 12
AB3
C
29 43Right-handed alpha
Helix 13
AB4
E
28 32Right-handed 310
Helix 14
AB5
R
22 45Right-handed alpha
Helix 15
AB6
R
52 82Right-handed alpha
Helix 16
AB7
R
91 113Right-handed alpha
Helix 17
AB8
R
115 123Right-handed alpha
Helix 18
AB9
R
123 131Right-handed alpha
Helix 19
AC1
R
134 152Right-handed alpha
Helix 20
AC2
R
152 157Right-handed alpha
Helix 21
AC3
R
181 218Right-handed alpha
Helix 22
AC4
R
270 298Right-handed alpha
Helix 23
AC5
R
311 318Right-handed alpha
Helix 24
AC6
R
319 324Right-handed alpha
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There are 14 sheets in PDB entry 8GCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
194 200anti-parallel
Strand 3
A
34 37parallel
Strand 4
A
220 225parallel
Strand 5
A
264 268parallel
Strand 6
A
319 322parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
134 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 151first strand
Strand 2
B
157 161anti-parallel
Strand 3
B
166 168anti-parallel
Strand 4
B
178 180anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 192first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
208 210anti-parallel
Strand 4
B
220 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
259 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 277first strand
Strand 2
B
284 288anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 306anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
18 24anti-parallel
Strand 3
E
78 83anti-parallel
Strand 4
E
68 73anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
115 119parallel
Strand 3
E
92 99anti-parallel
Strand 4
E
33 39anti-parallel
Strand 5
E
46 47anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 50first strand
Strand 2
E
59 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 141first strand
Strand 2
E
155 161anti-parallel
Strand 3
E
211 216anti-parallel
Strand 4
E
203 206anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
194 195first strand
Strand 2
E
186 190anti-parallel
Strand 3
E
176 179anti-parallel
Strand 4
E
225 228anti-parallel
Strand 5
E
244 245anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
162 163first strand
Strand 2
R
170 171anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il