Analysis of interatomic Contacts of Structural Units in PDB entry:
8GD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GD7 entry

There are 3 chains in PDB entry 8GD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1825VAL 2590
E
 C 7 A 19
F
 G 5 C 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8GD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1833 1845Right-handed alpha
Helix 2
AA2
A
1940 1953Right-handed alpha
Helix 3
AA3
A
1966 1979Right-handed alpha
Helix 4
AA4
A
1988 1997Right-handed alpha
Helix 5
AA5
A
2004 2013Right-handed alpha
Helix 6
AA6
A
2016 2022Right-handed alpha
Helix 7
AA7
A
2023 2028Right-handed 310
Helix 8
AA8
A
2041 2067Right-handed alpha
Helix 9
AA9
A
2069 2076Right-handed alpha
Helix 10
AB1
A
2076 2091Right-handed alpha
Helix 11
AB2
A
2095 2122Right-handed alpha
Helix 12
AB3
A
2129 2139Right-handed alpha
Helix 13
AB4
A
2180 2188Right-handed alpha
Helix 14
AB5
A
2191 2210Right-handed alpha
Helix 15
AB6
A
2210 2217Right-handed alpha
Helix 16
AB7
A
2313 2317Right-handed 310
Helix 17
AB8
A
2333 2344Right-handed alpha
Helix 18
AB9
A
2345 2355Right-handed alpha
Helix 19
AC1
A
2357 2368Right-handed alpha
Helix 20
AC2
A
2370 2374Right-handed 310
Helix 21
AC3
A
2375 2392Right-handed alpha
Helix 22
AC4
A
2394 2403Right-handed alpha
Helix 23
AC5
A
2405 2420Right-handed alpha
Helix 24
AC6
A
2420 2438Right-handed alpha
Helix 25
AC7
A
2451 2455Right-handed 310
Helix 26
AC8
A
2457 2496Right-handed alpha
Helix 27
AC9
A
2501 2510Right-handed alpha
Helix 28
AD1
A
2550 2564Right-handed alpha
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There are 6 sheets in PDB entry 8GD7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1826 1829first strand
Strand 2
A
1911 1916parallel
Strand 3
A
1898 1906anti-parallel
Strand 4
A
1849 1858anti-parallel
Strand 5
A
1961 1964parallel
Strand 6
A
1985 1987parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2092 2093first strand
Strand 2
A
2226 2229anti-parallel
Strand 3
A
2218 2221anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2232 2234first strand
Strand 2
A
2243 2245anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2256 2260first strand
Strand 2
A
2308 2312anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2534 2538first strand
Strand 2
A
2541 2547anti-parallel
Strand 3
A
2324 2331anti-parallel
Strand 4
A
2574 2579anti-parallel
Strand 5
A
2585 2587anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2439 2441first strand
Strand 2
A
2447 2449anti-parallel
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