Analysis of interatomic Contacts of Structural Units in PDB entry:
8GDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GDI entry

There is 1 chain in PDB entry 8GDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 13SER 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8GDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
35 41Right-handed alpha
Helix 3
AA3
A
42 57Right-handed alpha
Helix 4
AA4
A
68 72Right-handed 310
Helix 5
AA5
A
81 91Right-handed alpha
Helix 6
AA6
A
107 115Right-handed alpha
Helix 7
AA7
A
116 120Right-handed 310
Helix 8
AA8
A
123 133Right-handed alpha
Helix 9
AA9
A
134 136Right-handed 310
Helix 10
AB1
A
137 163Right-handed alpha
Helix 11
AB2
A
170 174Right-handed alpha
Helix 12
AB3
A
176 188Right-handed alpha
Helix 13
AB4
A
190 192Right-handed 310
Helix 14
AB5
A
193 205Right-handed alpha
Helix 15
AB6
A
215 240Right-handed alpha
Helix 16
AB7
A
244 252Right-handed alpha
Helix 17
AB8
A
260 277Right-handed alpha
Helix 18
AB9
A
278 293Right-handed alpha
Helix 19
AC1
A
293 303Right-handed alpha
Helix 20
AC2
A
303 320Right-handed alpha
Helix 21
AC3
A
350 354Right-handed alpha
Helix 22
AC4
A
388 407Right-handed alpha
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There are 5 sheets in PDB entry 8GDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
76 79anti-parallel
Strand 3
A
345 349parallel
Strand 4
A
324 329anti-parallel
Strand 5
A
95 96anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
431 433anti-parallel
Strand 3
A
411 412anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
257 258anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
338 340anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
427 429anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il