Analysis of interatomic Contacts of Structural Units in PDB entry:
8GDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GDL entry

There are 2 chains in PDB entry 8GDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ASN 356
B
 ASP 2ASN 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8GDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
37 60Right-handed alpha
Helix 3
AA3
A
76 92Right-handed alpha
Helix 4
AA4
A
94 99Right-handed 310
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
114 122Right-handed 310
Helix 7
AA7
A
126 135Right-handed alpha
Helix 8
AA8
A
136 146Right-handed alpha
Helix 9
AA9
A
147 158Right-handed alpha
Helix 10
AB1
A
165 183Right-handed alpha
Helix 11
AB2
A
184 188Right-handed 310
Helix 12
AB3
A
191 212Right-handed alpha
Helix 13
AB4
A
213 236Right-handed alpha
Helix 14
AB5
A
246 250Right-handed 310
Helix 15
AB6
A
258 269Right-handed alpha
Helix 16
AB7
A
282 287Right-handed alpha
Helix 17
AB8
A
333 340Right-handed alpha
Helix 18
AB9
A
346 356Right-handed alpha
Helix 19
AC1
B
30 34Right-handed 310
Helix 20
AC2
B
37 60Right-handed alpha
Helix 21
AC3
B
76 92Right-handed alpha
Helix 22
AC4
B
93 98Right-handed alpha
Helix 23
AC5
B
102 108Right-handed alpha
Helix 24
AC6
B
114 122Right-handed 310
Helix 25
AC7
B
126 135Right-handed alpha
Helix 26
AC8
B
136 146Right-handed alpha
Helix 27
AC9
B
147 158Right-handed alpha
Helix 28
AD1
B
165 183Right-handed alpha
Helix 29
AD2
B
184 187Right-handed 310
Helix 30
AD3
B
191 212Right-handed alpha
Helix 31
AD4
B
213 236Right-handed alpha
Helix 32
AD5
B
246 250Right-handed 310
Helix 33
AD6
B
258 269Right-handed alpha
Helix 34
AD7
B
282 287Right-handed alpha
Helix 35
AD8
B
333 340Right-handed alpha
Helix 36
AD9
B
346 356Right-handed alpha
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There are 4 sheets in PDB entry 8GDL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
252 257parallel
Strand 3
A
3 11parallel
Strand 4
A
293 301anti-parallel
Strand 5
A
304 312anti-parallel
Strand 6
A
320 323anti-parallel
Strand 7
A
275 276anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
252 257parallel
Strand 3
A
3 11parallel
Strand 4
A
293 301anti-parallel
Strand 5
A
304 312anti-parallel
Strand 6
A
331 332anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
252 257parallel
Strand 3
B
3 11parallel
Strand 4
B
293 301anti-parallel
Strand 5
B
304 312anti-parallel
Strand 6
B
320 323anti-parallel
Strand 7
B
275 276anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
252 257parallel
Strand 3
B
3 11parallel
Strand 4
B
293 301anti-parallel
Strand 5
B
304 312anti-parallel
Strand 6
B
331 332anti-parallel
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