Analysis of interatomic Contacts of Structural Units in PDB entry:
8GDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GDU entry

There is 1 chain in PDB entry 8GDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8GDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 7Right-handed alpha
Helix 2
AA2
A
19 28Right-handed alpha
Helix 3
AA3
A
44 53Right-handed alpha
Helix 4
AA4
A
63 77Right-handed alpha
Helix 5
AA5
A
87 94Right-handed 310
Helix 6
AA6
A
108 112Right-handed 310
Helix 7
AA7
A
113 115Right-handed 310
Helix 8
AA8
A
116 127Right-handed alpha
Helix 9
AA9
A
152 163Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8GDU.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
56 61parallel
Strand 3
A
35 39parallel
Strand 4
A
100 106parallel
Strand 5
A
128 139parallel
Strand 6
A
184 193anti-parallel
Strand 7
A
167 177anti-parallel
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