Analysis of interatomic Contacts of Structural Units in PDB entry:
8GDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GDY entry

There are 2 chains in PDB entry 8GDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 20ALA 137
B
 ASP 18ALA 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8GDY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 41Right-handed alpha
Helix 2
AA2
A
53 73Right-handed alpha
Helix 3
AA3
A
87 94Right-handed alpha
Helix 4
AA4
A
121 134Right-handed alpha
Helix 5
AA5
B
30 41Right-handed alpha
Helix 6
AA6
B
53 73Right-handed alpha
Helix 7
AA7
B
87 94Right-handed alpha
Helix 8
AA8
B
121 133Right-handed alpha
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There are 2 sheets in PDB entry 8GDY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
26 28anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
43 49parallel
Strand 5
A
101 106anti-parallel
Strand 6
A
114 115anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
26 28anti-parallel
Strand 3
B
78 83parallel
Strand 4
B
43 49parallel
Strand 5
B
101 106anti-parallel
Strand 6
B
114 115anti-parallel
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