Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GEE entry

There are 4 chains in PDB entry 8GEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 394
B	LEU 7	ASN 340
G	ARG 13	ARG 62
R	VAL 31	LEU 340

There are 29 helices in PDB entry 8GEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	40	Right-handed alpha
Helix 2	AA2	A	52	61	Right-handed alpha
Helix 3	AA3	A	95	113	Right-handed alpha
Helix 4	AA4	A	160	169	Right-handed alpha
Helix 5	AA5	A	232	238	Right-handed 310
Helix 6	AA6	A	264	278	Right-handed alpha
Helix 7	AA7	A	293	304	Right-handed alpha
Helix 8	AA8	A	307	312	Right-handed alpha
Helix 9	AA9	A	313	318	Right-handed alpha
Helix 10	AB1	A	331	352	Right-handed alpha
Helix 11	AB2	A	370	390	Right-handed alpha
Helix 12	AB3	A	391	393	Right-handed 310
Helix 13	AB4	B	8	26	Right-handed alpha
Helix 14	AB5	B	29	35	Right-handed alpha
Helix 15	AB6	G	14	24	Right-handed alpha
Helix 16	AB7	G	29	44	Right-handed alpha
Helix 17	AB8	R	32	61	Right-handed alpha
Helix 18	AB9	R	62	65	Right-handed 310
Helix 19	AC1	R	66	97	Right-handed alpha
Helix 20	AC2	R	102	136	Right-handed alpha
Helix 21	AC3	R	137	145	Right-handed alpha
Helix 22	AC4	R	146	171	Right-handed alpha
Helix 23	AC5	R	181	187	Right-handed alpha
Helix 24	AC6	R	198	208	Right-handed alpha
Helix 25	AC7	R	208	237	Right-handed alpha
Helix 26	AC8	R	270	299	Right-handed alpha
Helix 27	AC9	R	304	322	Right-handed alpha
Helix 28	AD1	R	322	327	Right-handed alpha
Helix 29	AD2	R	329	340	Right-handed alpha

There are 8 sheets in PDB entry 8GEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	221	223	anti-parallel
Strand 3	A	43	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	362	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	135	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	156	159	anti-parallel
Strand 3	B	167	170	anti-parallel
Strand 4	B	175	179	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	253	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEE