Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GEH entry

There are 4 chains in PDB entry 8GEH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 394
B	LEU 7	ASN 340
G	ARG 13	ARG 62
R	VAL 31	LEU 340

There are 34 helices in PDB entry 8GEH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	40	Right-handed alpha
Helix 2	AA2	A	48	51	Right-handed 310
Helix 3	AA3	A	52	61	Right-handed alpha
Helix 4	AA4	A	92	114	Right-handed alpha
Helix 5	AA5	A	125	133	Right-handed alpha
Helix 6	AA6	A	144	148	Right-handed alpha
Helix 7	AA7	A	174	181	Right-handed alpha
Helix 8	AA8	A	195	200	Right-handed alpha
Helix 9	AA9	A	233	238	Right-handed alpha
Helix 10	AB1	A	265	278	Right-handed alpha
Helix 11	AB2	A	293	303	Right-handed alpha
Helix 12	AB3	A	307	312	Right-handed alpha
Helix 13	AB4	A	313	318	Right-handed alpha
Helix 14	AB5	A	331	353	Right-handed alpha
Helix 15	AB6	A	370	390	Right-handed alpha
Helix 16	AB7	A	391	393	Right-handed 310
Helix 17	AB8	B	8	25	Right-handed alpha
Helix 18	AB9	B	29	35	Right-handed alpha
Helix 19	AC1	G	14	24	Right-handed alpha
Helix 20	AC2	G	29	44	Right-handed alpha
Helix 21	AC3	R	32	61	Right-handed alpha
Helix 22	AC4	R	66	86	Right-handed alpha
Helix 23	AC5	R	86	97	Right-handed alpha
Helix 24	AC6	R	102	137	Right-handed alpha
Helix 25	AC7	R	140	145	Right-handed alpha
Helix 26	AC8	R	146	163	Right-handed alpha
Helix 27	AC9	R	165	172	Right-handed alpha
Helix 28	AD1	R	181	187	Right-handed alpha
Helix 29	AD2	R	196	208	Right-handed alpha
Helix 30	AD3	R	208	236	Right-handed alpha
Helix 31	AD4	R	270	293	Right-handed alpha
Helix 32	AD5	R	294	299	Right-handed alpha
Helix 33	AD6	R	304	326	Right-handed alpha
Helix 34	AD7	R	329	340	Right-handed alpha

There are 8 sheets in PDB entry 8GEH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	219	223	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	362	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GEH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEH