Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GEJ entry

There are 4 chains in PDB entry 8GEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 393
B	LEU 7	ASN 340
G	ARG 13	PHE 61
R	VAL 31	LEU 339

There are 29 helices in PDB entry 8GEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	40	Right-handed alpha
Helix 2	AA2	A	52	61	Right-handed alpha
Helix 3	AA3	A	91	113	Right-handed alpha
Helix 4	AA4	A	125	134	Right-handed alpha
Helix 5	AA5	A	145	156	Right-handed alpha
Helix 6	AA6	A	156	165	Right-handed alpha
Helix 7	AA7	A	176	185	Right-handed alpha
Helix 8	AA8	A	232	238	Right-handed alpha
Helix 9	AA9	A	264	278	Right-handed alpha
Helix 10	AB1	A	293	303	Right-handed alpha
Helix 11	AB2	A	307	312	Right-handed alpha
Helix 12	AB3	A	313	318	Right-handed alpha
Helix 13	AB4	A	331	350	Right-handed alpha
Helix 14	AB5	A	370	388	Right-handed alpha
Helix 15	AB6	B	8	26	Right-handed alpha
Helix 16	AB7	B	29	37	Right-handed alpha
Helix 17	AB8	G	14	24	Right-handed alpha
Helix 18	AB9	G	29	45	Right-handed alpha
Helix 19	AC1	R	32	61	Right-handed alpha
Helix 20	AC2	R	66	96	Right-handed alpha
Helix 21	AC3	R	102	137	Right-handed alpha
Helix 22	AC4	R	137	145	Right-handed alpha
Helix 23	AC5	R	146	160	Right-handed alpha
Helix 24	AC6	R	165	172	Right-handed alpha
Helix 25	AC7	R	181	187	Right-handed alpha
Helix 26	AC8	R	196	235	Right-handed alpha
Helix 27	AC9	R	270	299	Right-handed alpha
Helix 28	AD1	R	304	327	Right-handed alpha
Helix 29	AD2	R	332	339	Right-handed alpha

There are 12 sheets in PDB entry 8GEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	211	first strand
Strand 2	A	219	222	anti-parallel
Strand 3	A	41	44	parallel
Strand 4	A	243	245	parallel
Strand 5	A	286	288	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	290	292	parallel
Strand 3	A	362	363	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	69	73	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	157	158	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	180	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	209	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	240	242	anti-parallel
Strand 3	B	252	254	anti-parallel
Strand 4	B	260	262	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	320	first strand
Strand 2	B	327	331	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEJ