Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GEN entry

There is 1 chain in PDB entry 8GEN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1LYS 609
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8GEN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
75 79Right-handed 310
Helix 4
AA4
A
320 335Right-handed alpha
Helix 5
AA5
A
347 358Right-handed alpha
Helix 6
AA6
A
396 412Right-handed alpha
Helix 7
AA7
A
432 448Right-handed alpha
Helix 8
AA8
A
468 473Right-handed alpha
Helix 9
AA9
A
490 507Right-handed alpha
Helix 10
AB1
A
534 550Right-handed alpha
Helix 11
AB2
A
590 602Right-handed alpha
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There are 7 sheets in PDB entry 8GEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
183 186anti-parallel
Strand 3
A
84 87anti-parallel
Strand 4
A
113 116anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
126 133anti-parallel
Strand 5
A
93 98anti-parallel
Strand 6
A
101 107anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
218 219anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 203first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
250 252anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
232 233anti-parallel
Strand 3
A
267 273anti-parallel
Strand 4
A
276 282anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
294 296anti-parallel
Strand 3
A
299 300anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 307first strand
Strand 2
A
338 340parallel
Strand 3
A
360 364parallel
Strand 4
A
417 424parallel
Strand 5
A
454 458parallel
Strand 6
A
476 479parallel
Strand 7
A
512 516parallel
Strand 8
A
555 561parallel
Strand 9
A
303 307parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il