Analysis of interatomic Contacts of Structural Units in PDB entry:
8GER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GER entry

There is 1 chain in PDB entry 8GER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -1THR 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 8GER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 61Right-handed alpha
Helix 2
AA2
A
75 80Right-handed alpha
Helix 3
AA3
A
320 335Right-handed alpha
Helix 4
AA4
A
347 358Right-handed alpha
Helix 5
AA5
A
396 412Right-handed alpha
Helix 6
AA6
A
432 448Right-handed alpha
Helix 7
AA7
A
468 473Right-handed alpha
Helix 8
AA8
A
490 506Right-handed alpha
Helix 9
AA9
A
507 509Right-handed 310
Helix 10
AB1
A
534 551Right-handed alpha
Helix 11
AB2
A
590 602Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8GER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
113 116anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
126 133anti-parallel
Strand 5
A
93 98anti-parallel
Strand 6
A
101 106anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 198first strand
Strand 2
A
215 220anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
210 212anti-parallel
Strand 3
A
252 254anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
267 273anti-parallel
Strand 4
A
276 282anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
294 296anti-parallel
Strand 3
A
299 300anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 307first strand
Strand 2
A
338 340parallel
Strand 3
A
360 364parallel
Strand 4
A
417 424parallel
Strand 5
A
454 458parallel
Strand 6
A
476 479parallel
Strand 7
A
512 516parallel
Strand 8
A
555 561parallel
Strand 9
A
303 307parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
383 384anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il