Analysis of interatomic Contacts of Structural Units in PDB entry:
8GES

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GES entry

There are 4 chains in PDB entry 8GES (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	LYS 644
D	ARG 1	LYS 644
C	MET 0	LYS 644
B	MET 0	LYS 644

There are 51 helices in PDB entry 8GES. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	108	Right-handed 310
Helix 2	AA2	A	229	231	Right-handed 310
Helix 3	AA3	A	295	310	Right-handed alpha
Helix 4	AA4	A	322	333	Right-handed alpha
Helix 5	AA5	A	347	349	Right-handed 310
Helix 6	AA6	A	350	366	Right-handed alpha
Helix 7	AA7	A	387	405	Right-handed alpha
Helix 8	AA8	A	422	427	Right-handed 310
Helix 9	AA9	A	443	445	Right-handed 310
Helix 10	AB1	A	446	458	Right-handed alpha
Helix 11	AB2	A	486	502	Right-handed alpha
Helix 12	AB3	A	545	556	Right-handed alpha
Helix 13	AB4	A	638	642	Right-handed 310
Helix 14	AB5	D	104	108	Right-handed 310
Helix 15	AB6	D	295	310	Right-handed alpha
Helix 16	AB7	D	322	333	Right-handed alpha
Helix 17	AB8	D	347	349	Right-handed 310
Helix 18	AB9	D	350	366	Right-handed alpha
Helix 19	AC1	D	387	405	Right-handed alpha
Helix 20	AC2	D	422	427	Right-handed 310
Helix 21	AC3	D	443	445	Right-handed 310
Helix 22	AC4	D	446	458	Right-handed alpha
Helix 23	AC5	D	486	502	Right-handed alpha
Helix 24	AC6	D	545	556	Right-handed alpha
Helix 25	AC7	D	638	642	Right-handed 310
Helix 26	AC8	C	62	64	Right-handed 310
Helix 27	AC9	C	105	108	Right-handed 310
Helix 28	AD1	C	295	310	Right-handed alpha
Helix 29	AD2	C	322	333	Right-handed alpha
Helix 30	AD3	C	347	349	Right-handed 310
Helix 31	AD4	C	350	364	Right-handed alpha
Helix 32	AD5	C	387	405	Right-handed alpha
Helix 33	AD6	C	422	427	Right-handed 310
Helix 34	AD7	C	443	445	Right-handed 310
Helix 35	AD8	C	446	458	Right-handed alpha
Helix 36	AD9	C	486	502	Right-handed alpha
Helix 37	AE1	C	545	556	Right-handed alpha
Helix 38	AE2	C	638	642	Right-handed 310
Helix 39	AE3	B	105	108	Right-handed 310
Helix 40	AE4	B	229	231	Right-handed 310
Helix 41	AE5	B	295	310	Right-handed alpha
Helix 42	AE6	B	322	333	Right-handed alpha
Helix 43	AE7	B	347	349	Right-handed 310
Helix 44	AE8	B	350	366	Right-handed alpha
Helix 45	AE9	B	387	405	Right-handed alpha
Helix 46	AF1	B	422	427	Right-handed 310
Helix 47	AF2	B	443	445	Right-handed 310
Helix 48	AF3	B	446	458	Right-handed alpha
Helix 49	AF4	B	486	502	Right-handed alpha
Helix 50	AF5	B	545	556	Right-handed alpha
Helix 51	AF6	B	638	642	Right-handed 310

There are 44 sheets in PDB entry 8GES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	144	149	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	100	103	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	10	13	anti-parallel
Strand 3	A	52	60	anti-parallel
Strand 4	A	112	120	anti-parallel
Strand 5	A	80	85	anti-parallel
Strand 6	A	88	94	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	184	185	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	171	first strand
Strand 2	A	174	182	anti-parallel
Strand 3	A	216	222	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	211	first strand
Strand 2	A	192	198	anti-parallel
Strand 3	A	236	244	anti-parallel
Strand 4	A	247	256	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	232	233	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	264	first strand
Strand 2	A	268	271	anti-parallel
Strand 3	A	274	275	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	282	first strand
Strand 2	A	313	316	parallel
Strand 3	A	335	339	parallel
Strand 4	A	371	378	parallel
Strand 5	A	409	414	parallel
Strand 6	A	431	434	parallel
Strand 7	A	463	468	parallel
Strand 8	A	509	512	parallel
Strand 9	A	278	282	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	531	532	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	563	first strand
Strand 2	A	575	581	anti-parallel
Strand 3	A	605	611	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	571	first strand
Strand 2	A	625	633	parallel
Strand 3	A	615	622	anti-parallel
Strand 4	A	586	591	anti-parallel
Strand 5	A	594	600	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	69	74	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	10	13	anti-parallel
Strand 3	D	52	60	anti-parallel
Strand 4	D	112	120	anti-parallel
Strand 5	D	80	85	anti-parallel
Strand 6	D	88	94	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	184	185	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	167	first strand
Strand 2	D	178	181	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	236	241	anti-parallel
Strand 3	D	252	256	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	228	first strand
Strand 2	D	232	233	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	264	first strand
Strand 2	D	268	271	anti-parallel
Strand 3	D	274	275	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	282	first strand
Strand 2	D	313	316	parallel
Strand 3	D	335	339	parallel
Strand 4	D	371	378	parallel
Strand 5	D	409	415	parallel
Strand 6	D	431	434	parallel
Strand 7	D	463	468	parallel
Strand 8	D	507	512	parallel
Strand 9	D	278	282	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	519	first strand
Strand 2	D	531	532	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	561	563	first strand
Strand 2	D	575	582	anti-parallel
Strand 3	D	605	611	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	570	571	first strand
Strand 2	D	625	633	parallel
Strand 3	D	615	622	anti-parallel
Strand 4	D	586	591	anti-parallel
Strand 5	D	594	600	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	144	149	anti-parallel
Strand 3	C	69	74	anti-parallel
Strand 4	C	100	103	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	29	first strand
Strand 2	C	11	13	anti-parallel
Strand 3	C	52	60	anti-parallel
Strand 4	C	112	120	anti-parallel
Strand 5	C	80	85	anti-parallel
Strand 6	C	88	94	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	184	185	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	174	182	anti-parallel
Strand 3	C	170	171	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	174	182	anti-parallel
Strand 3	C	216	221	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	211	first strand
Strand 2	C	192	198	anti-parallel
Strand 3	C	236	243	anti-parallel
Strand 4	C	248	256	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	264	first strand
Strand 2	C	268	271	anti-parallel
Strand 3	C	274	275	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	282	first strand
Strand 2	C	313	316	parallel
Strand 3	C	335	339	parallel
Strand 4	C	371	378	parallel
Strand 5	C	409	415	parallel
Strand 6	C	431	434	parallel
Strand 7	C	463	467	parallel
Strand 8	C	509	512	parallel
Strand 9	C	278	282	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	531	532	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	561	563	first strand
Strand 2	C	575	582	anti-parallel
Strand 3	C	605	611	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	570	571	first strand
Strand 2	C	625	633	parallel
Strand 3	C	615	622	anti-parallel
Strand 4	C	586	591	anti-parallel
Strand 5	C	594	600	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	100	103	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	11	13	anti-parallel
Strand 3	B	52	60	anti-parallel
Strand 4	B	112	120	anti-parallel
Strand 5	B	80	85	anti-parallel
Strand 6	B	88	94	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	184	185	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	171	first strand
Strand 2	B	174	182	anti-parallel
Strand 3	B	216	221	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	211	first strand
Strand 2	B	192	198	anti-parallel
Strand 3	B	236	244	anti-parallel
Strand 4	B	247	256	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	232	233	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	264	first strand
Strand 2	B	268	271	anti-parallel
Strand 3	B	274	275	anti-parallel

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There are 9 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	282	first strand
Strand 2	B	313	316	parallel
Strand 3	B	335	339	parallel
Strand 4	B	371	378	parallel
Strand 5	B	409	414	parallel
Strand 6	B	431	434	parallel
Strand 7	B	463	468	parallel
Strand 8	B	509	512	parallel
Strand 9	B	278	282	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	519	first strand
Strand 2	B	531	532	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	563	first strand
Strand 2	B	575	582	anti-parallel
Strand 3	B	605	611	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	571	first strand
Strand 2	B	625	633	parallel
Strand 3	B	615	622	anti-parallel
Strand 4	B	587	591	anti-parallel
Strand 5	B	594	599	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GES

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GES