Analysis of interatomic Contacts of Structural Units in PDB entry:
8GET

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GET entry

There are 4 chains in PDB entry 8GET (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	LYS 643
B	MET 0	LYS 643
C	MET 0	GLY 732
D	MET 0	LEU 642

There are 49 helices in PDB entry 8GET. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	108	Right-handed 310
Helix 2	AA2	A	228	230	Right-handed 310
Helix 3	AA3	A	294	309	Right-handed alpha
Helix 4	AA4	A	321	332	Right-handed alpha
Helix 5	AA5	A	346	348	Right-handed 310
Helix 6	AA6	A	349	364	Right-handed alpha
Helix 7	AA7	A	386	404	Right-handed alpha
Helix 8	AA8	A	421	426	Right-handed 310
Helix 9	AA9	A	442	444	Right-handed 310
Helix 10	AB1	A	445	457	Right-handed alpha
Helix 11	AB2	A	485	501	Right-handed alpha
Helix 12	AB3	A	544	555	Right-handed alpha
Helix 13	AB4	B	60	64	Right-handed 310
Helix 14	AB5	B	294	309	Right-handed alpha
Helix 15	AB6	B	321	332	Right-handed alpha
Helix 16	AB7	B	346	348	Right-handed 310
Helix 17	AB8	B	349	363	Right-handed alpha
Helix 18	AB9	B	386	404	Right-handed alpha
Helix 19	AC1	B	421	426	Right-handed 310
Helix 20	AC2	B	442	444	Right-handed 310
Helix 21	AC3	B	445	457	Right-handed alpha
Helix 22	AC4	B	485	501	Right-handed alpha
Helix 23	AC5	B	544	555	Right-handed alpha
Helix 24	AC6	B	637	641	Right-handed 310
Helix 25	AC7	C	105	108	Right-handed 310
Helix 26	AC8	C	294	309	Right-handed alpha
Helix 27	AC9	C	321	332	Right-handed alpha
Helix 28	AD1	C	346	348	Right-handed 310
Helix 29	AD2	C	349	365	Right-handed alpha
Helix 30	AD3	C	386	404	Right-handed alpha
Helix 31	AD4	C	421	426	Right-handed 310
Helix 32	AD5	C	442	444	Right-handed 310
Helix 33	AD6	C	445	457	Right-handed alpha
Helix 34	AD7	C	485	501	Right-handed alpha
Helix 35	AD8	C	544	555	Right-handed alpha
Helix 36	AD9	C	637	641	Right-handed 310
Helix 37	AE1	C	720	730	Right-handed alpha
Helix 38	AE2	D	60	64	Right-handed 310
Helix 39	AE3	D	227	231	Right-handed 310
Helix 40	AE4	D	294	309	Right-handed alpha
Helix 41	AE5	D	321	332	Right-handed alpha
Helix 42	AE6	D	349	364	Right-handed alpha
Helix 43	AE7	D	386	404	Right-handed alpha
Helix 44	AE8	D	421	425	Right-handed 310
Helix 45	AE9	D	442	444	Right-handed 310
Helix 46	AF1	D	445	457	Right-handed alpha
Helix 47	AF2	D	485	501	Right-handed alpha
Helix 48	AF3	D	544	555	Right-handed alpha
Helix 49	AF4	D	637	641	Right-handed 310

There are 46 sheets in PDB entry 8GET. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	144	149	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	100	103	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	10	13	anti-parallel
Strand 3	A	52	60	anti-parallel
Strand 4	A	112	120	anti-parallel
Strand 5	A	80	85	anti-parallel
Strand 6	A	88	94	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	139	140	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	183	184	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	171	first strand
Strand 2	A	174	181	anti-parallel
Strand 3	A	217	220	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	209	first strand
Strand 2	A	191	197	anti-parallel
Strand 3	A	235	243	anti-parallel
Strand 4	A	246	255	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	231	232	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	263	first strand
Strand 2	A	267	270	anti-parallel
Strand 3	A	273	274	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	281	first strand
Strand 2	A	312	315	parallel
Strand 3	A	334	337	parallel
Strand 4	A	370	377	parallel
Strand 5	A	408	414	parallel
Strand 6	A	430	433	parallel
Strand 7	A	462	466	parallel
Strand 8	A	508	511	parallel
Strand 9	A	277	281	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	530	531	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	574	580	anti-parallel
Strand 3	A	604	610	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	570	first strand
Strand 2	A	624	632	parallel
Strand 3	A	614	621	anti-parallel
Strand 4	A	585	590	anti-parallel
Strand 5	A	593	599	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	100	103	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	10	13	anti-parallel
Strand 3	B	52	59	anti-parallel
Strand 4	B	113	120	anti-parallel
Strand 5	B	80	85	anti-parallel
Strand 6	B	88	94	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	183	184	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	171	first strand
Strand 2	B	174	181	anti-parallel
Strand 3	B	217	220	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	210	first strand
Strand 2	B	190	197	anti-parallel
Strand 3	B	235	243	anti-parallel
Strand 4	B	247	255	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	231	232	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	263	first strand
Strand 2	B	267	270	anti-parallel
Strand 3	B	273	274	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	312	315	parallel
Strand 3	B	334	337	parallel
Strand 4	B	370	377	parallel
Strand 5	B	408	413	parallel
Strand 6	B	430	433	parallel
Strand 7	B	462	467	parallel
Strand 8	B	509	511	parallel
Strand 9	B	278	281	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	518	first strand
Strand 2	B	530	531	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	563	first strand
Strand 2	B	574	581	anti-parallel
Strand 3	B	604	610	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	569	570	first strand
Strand 2	B	624	632	parallel
Strand 3	B	615	621	anti-parallel
Strand 4	B	585	590	anti-parallel
Strand 5	B	593	599	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	144	149	anti-parallel
Strand 3	C	69	74	anti-parallel
Strand 4	C	100	103	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	10	13	anti-parallel
Strand 3	C	52	60	anti-parallel
Strand 4	C	112	120	anti-parallel
Strand 5	C	80	85	anti-parallel
Strand 6	C	88	94	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	183	184	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	174	181	anti-parallel
Strand 3	C	170	171	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	174	181	anti-parallel
Strand 3	C	215	220	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	206	first strand
Strand 2	C	191	197	anti-parallel
Strand 3	C	209	210	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	206	first strand
Strand 2	C	191	197	anti-parallel
Strand 3	C	235	241	anti-parallel
Strand 4	C	249	255	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	231	232	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	263	first strand
Strand 2	C	267	270	anti-parallel
Strand 3	C	273	274	anti-parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	281	first strand
Strand 2	C	312	315	parallel
Strand 3	C	334	338	parallel
Strand 4	C	370	377	parallel
Strand 5	C	408	414	parallel
Strand 6	C	430	433	parallel
Strand 7	C	462	466	parallel
Strand 8	C	508	511	parallel
Strand 9	C	277	281	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	518	first strand
Strand 2	C	530	531	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	560	562	first strand
Strand 2	C	574	581	anti-parallel
Strand 3	C	604	610	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	569	570	first strand
Strand 2	C	624	632	parallel
Strand 3	C	614	621	anti-parallel
Strand 4	C	585	590	anti-parallel
Strand 5	C	593	599	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	100	103	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	10	13	anti-parallel
Strand 3	D	52	59	anti-parallel
Strand 4	D	113	120	anti-parallel
Strand 5	D	80	85	anti-parallel
Strand 6	D	88	93	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	183	184	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	167	first strand
Strand 2	D	178	181	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	195	first strand
Strand 2	D	235	240	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	263	first strand
Strand 2	D	267	270	anti-parallel
Strand 3	D	273	274	anti-parallel

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There are 9 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	281	first strand
Strand 2	D	312	314	parallel
Strand 3	D	334	337	parallel
Strand 4	D	370	377	parallel
Strand 5	D	408	413	parallel
Strand 6	D	431	433	parallel
Strand 7	D	464	466	parallel
Strand 8	D	508	511	parallel
Strand 9	D	277	281	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	518	first strand
Strand 2	D	530	531	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	560	562	first strand
Strand 2	D	574	581	anti-parallel
Strand 3	D	604	610	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	569	570	first strand
Strand 2	D	624	632	parallel
Strand 3	D	614	621	anti-parallel
Strand 4	D	585	590	anti-parallel
Strand 5	D	593	599	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GET

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GET