Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GEX entry

There are 4 chains in PDB entry 8GEX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 41	THR 463
B	GLY 41	ASP 459
C	GLY 41	ASP 459
D	GLY 41	LYS 104

There are 42 helices in PDB entry 8GEX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	100	Right-handed alpha
Helix 2	AA2	A	108	112	Right-handed 310
Helix 3	AA3	A	188	193	Right-handed 310
Helix 4	AA4	A	195	199	Right-handed 310
Helix 5	AA5	A	223	228	Right-handed alpha
Helix 6	AA6	A	268	273	Right-handed alpha
Helix 7	AA7	A	284	286	Right-handed 310
Helix 8	AA8	B	94	100	Right-handed alpha
Helix 9	AA9	B	108	112	Right-handed 310
Helix 10	AB1	B	188	193	Right-handed 310
Helix 11	AB2	B	195	199	Right-handed 310
Helix 12	AB3	B	223	228	Right-handed alpha
Helix 13	AB4	B	268	273	Right-handed alpha
Helix 14	AB5	B	284	286	Right-handed 310
Helix 15	AB6	C	94	100	Right-handed alpha
Helix 16	AB7	C	108	112	Right-handed 310
Helix 17	AB8	C	188	193	Right-handed 310
Helix 18	AB9	C	195	199	Right-handed 310
Helix 19	AC1	C	223	228	Right-handed alpha
Helix 20	AC2	C	268	273	Right-handed alpha
Helix 21	AC3	C	284	286	Right-handed 310
Helix 22	AC4	D	94	100	Right-handed alpha
Helix 23	AC5	D	108	112	Right-handed 310
Helix 24	AC6	D	188	193	Right-handed 310
Helix 25	AC7	D	195	199	Right-handed 310
Helix 26	AC8	D	223	228	Right-handed alpha
Helix 27	AC9	D	268	273	Right-handed alpha
Helix 28	AD1	D	284	286	Right-handed 310
Helix 29	AD2	E	94	100	Right-handed alpha
Helix 30	AD3	E	108	112	Right-handed 310
Helix 31	AD4	E	188	193	Right-handed 310
Helix 32	AD5	E	195	199	Right-handed 310
Helix 33	AD6	E	223	228	Right-handed alpha
Helix 34	AD7	E	268	273	Right-handed alpha
Helix 35	AD8	E	284	286	Right-handed 310
Helix 36	AD9	F	94	100	Right-handed alpha
Helix 37	AE1	F	108	112	Right-handed 310
Helix 38	AE2	F	188	193	Right-handed 310
Helix 39	AE3	F	195	199	Right-handed 310
Helix 40	AE4	F	223	228	Right-handed alpha
Helix 41	AE5	F	268	273	Right-handed alpha
Helix 42	AE6	F	284	288	Right-handed 310

There are 59 sheets in PDB entry 8GEX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	451	457	anti-parallel
Strand 4	A	444	448	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	80	first strand
Strand 2	A	83	90	anti-parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	152	156	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	129	130	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	169	171	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	182	186	anti-parallel
Strand 3	A	205	209	anti-parallel
Strand 4	A	221	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	239	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	261	266	anti-parallel
Strand 4	A	275	278	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	291	first strand
Strand 2	A	301	308	anti-parallel
Strand 3	A	296	298	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	291	first strand
Strand 2	A	301	308	anti-parallel
Strand 3	A	319	324	anti-parallel
Strand 4	A	329	336	anti-parallel
Strand 5	A	381	382	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	349	first strand
Strand 2	A	352	362	anti-parallel
Strand 3	A	367	374	anti-parallel
Strand 4	A	389	392	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	401	first strand
Strand 2	A	405	409	anti-parallel
Strand 3	A	420	424	anti-parallel
Strand 4	A	430	432	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	448	first strand
Strand 2	B	451	457	anti-parallel
Strand 3	B	42	48	anti-parallel
Strand 4	B	54	57	anti-parallel
Strand 5	D	54	57	anti-parallel
Strand 6	D	42	48	anti-parallel
Strand 7	D	451	457	anti-parallel
Strand 8	D	444	448	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	80	first strand
Strand 2	B	83	90	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	152	156	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	93	first strand
Strand 2	B	129	130	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	169	172	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	182	186	anti-parallel
Strand 3	B	205	209	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	239	first strand
Strand 2	B	242	247	anti-parallel
Strand 3	B	261	266	anti-parallel
Strand 4	B	275	278	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	291	first strand
Strand 2	B	301	308	anti-parallel
Strand 3	B	296	298	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	291	first strand
Strand 2	B	301	308	anti-parallel
Strand 3	B	319	324	anti-parallel
Strand 4	B	329	336	anti-parallel
Strand 5	B	381	382	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	349	first strand
Strand 2	B	352	362	anti-parallel
Strand 3	B	367	374	anti-parallel
Strand 4	B	389	392	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	401	first strand
Strand 2	B	405	409	anti-parallel
Strand 3	B	420	424	anti-parallel
Strand 4	B	430	432	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	451	457	anti-parallel
Strand 4	C	444	448	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	80	first strand
Strand 2	C	83	90	anti-parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	152	156	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	93	first strand
Strand 2	C	129	130	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	166	first strand
Strand 2	C	169	171	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	176	first strand
Strand 2	C	182	186	anti-parallel
Strand 3	C	205	209	anti-parallel
Strand 4	C	221	222	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	239	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	261	266	anti-parallel
Strand 4	C	275	278	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	291	first strand
Strand 2	C	301	308	anti-parallel
Strand 3	C	296	298	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	291	first strand
Strand 2	C	301	308	anti-parallel
Strand 3	C	319	324	anti-parallel
Strand 4	C	329	336	anti-parallel
Strand 5	C	381	382	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	349	first strand
Strand 2	C	352	362	anti-parallel
Strand 3	C	367	374	anti-parallel
Strand 4	C	389	392	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	401	first strand
Strand 2	C	405	409	anti-parallel
Strand 3	C	420	424	anti-parallel
Strand 4	C	430	432	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	80	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	138	143	anti-parallel
Strand 4	D	152	156	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	93	first strand
Strand 2	D	129	130	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	169	171	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	182	186	anti-parallel
Strand 3	D	205	209	anti-parallel
Strand 4	D	221	222	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	239	first strand
Strand 2	D	242	247	anti-parallel
Strand 3	D	261	266	anti-parallel
Strand 4	D	275	278	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	291	first strand
Strand 2	D	301	308	anti-parallel
Strand 3	D	296	298	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	291	first strand
Strand 2	D	301	308	anti-parallel
Strand 3	D	319	324	anti-parallel
Strand 4	D	329	336	anti-parallel
Strand 5	D	381	382	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	349	first strand
Strand 2	D	352	362	anti-parallel
Strand 3	D	367	374	anti-parallel
Strand 4	D	389	392	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	397	401	first strand
Strand 2	D	405	409	anti-parallel
Strand 3	D	420	424	anti-parallel
Strand 4	D	430	431	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	42	48	anti-parallel
Strand 3	E	451	457	anti-parallel
Strand 4	E	444	448	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	80	first strand
Strand 2	E	83	90	anti-parallel
Strand 3	E	138	143	anti-parallel
Strand 4	E	152	156	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	129	130	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	166	first strand
Strand 2	E	169	171	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	176	first strand
Strand 2	E	182	186	anti-parallel
Strand 3	E	205	209	anti-parallel
Strand 4	E	220	222	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	239	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	261	266	anti-parallel
Strand 4	E	275	278	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	291	first strand
Strand 2	E	301	308	anti-parallel
Strand 3	E	296	298	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	291	first strand
Strand 2	E	301	308	anti-parallel
Strand 3	E	319	324	anti-parallel
Strand 4	E	329	336	anti-parallel
Strand 5	E	381	382	parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	347	first strand
Strand 2	E	354	362	anti-parallel
Strand 3	E	367	374	anti-parallel
Strand 4	E	389	392	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	397	401	first strand
Strand 2	E	405	409	anti-parallel
Strand 3	E	420	424	anti-parallel
Strand 4	E	430	432	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	56	first strand
Strand 2	F	42	48	anti-parallel
Strand 3	F	451	457	anti-parallel
Strand 4	F	444	448	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	80	first strand
Strand 2	F	83	90	anti-parallel
Strand 3	F	138	143	anti-parallel
Strand 4	F	152	156	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	93	first strand
Strand 2	F	129	130	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	166	first strand
Strand 2	F	169	171	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	176	first strand
Strand 2	F	182	186	anti-parallel
Strand 3	F	205	209	anti-parallel
Strand 4	F	220	222	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	239	first strand
Strand 2	F	242	247	anti-parallel
Strand 3	F	261	266	anti-parallel
Strand 4	F	275	278	anti-parallel

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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	291	first strand
Strand 2	F	301	307	anti-parallel
Strand 3	F	296	298	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	291	first strand
Strand 2	F	301	307	anti-parallel
Strand 3	F	319	324	anti-parallel
Strand 4	F	329	335	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	345	first strand
Strand 2	F	355	361	anti-parallel
Strand 3	F	368	374	anti-parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	397	401	first strand
Strand 2	F	405	409	anti-parallel
Strand 3	F	420	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GEX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GEX