Analysis of interatomic Contacts of Structural Units in PDB entry:
8GF5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GF5 entry

There are 13 chains in PDB entry 8GF5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LYS 270
A	ALA 272	ARG 284
A	ALA 286	GLN 471
A	GLY 473	ALA 569
B	ALA 76	LYS 270
B	ALA 272	ARG 284
B	ALA 286	GLN 471
B	GLY 473	ALA 569
C	ASP 3	ALA 431
D	SER 2	GLY 432
E	ALA 2	LYS 248
F	ALA 2	LYS 248
X	ASP 10	VAL 127

There are125 helices in PDB entry 8GF5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	17	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	47	64	Right-handed alpha
Helix 4	AA4	A	69	73	Right-handed 310
Helix 5	AA5	A	97	101	Right-handed 310
Helix 6	AA6	A	105	117	Right-handed alpha
Helix 7	AA7	A	123	135	Right-handed alpha
Helix 8	AA8	A	139	154	Right-handed alpha
Helix 9	AA9	A	183	190	Right-handed alpha
Helix 10	AB1	A	191	195	Right-handed 310
Helix 11	AB2	A	197	202	Right-handed alpha
Helix 12	AB3	A	203	215	Right-handed alpha
Helix 13	AB4	A	225	232	Right-handed alpha
Helix 14	AB5	A	235	253	Right-handed alpha
Helix 15	AB6	A	260	272	Right-handed alpha
Helix 16	AB7	A	296	304	Right-handed alpha
Helix 17	AB8	A	312	329	Right-handed alpha
Helix 18	AB9	A	331	336	Right-handed alpha
Helix 19	AC1	A	343	348	Right-handed alpha
Helix 20	AC2	A	349	352	Right-handed 310
Helix 21	AC3	A	354	371	Right-handed alpha
Helix 22	AC4	A	386	408	Right-handed alpha
Helix 23	AC5	A	408	415	Right-handed alpha
Helix 24	AC6	A	417	438	Right-handed alpha
Helix 25	AC7	A	439	459	Right-handed alpha
Helix 26	AC8	A	467	472	Right-handed alpha
Helix 27	AC9	A	472	477	Right-handed alpha
Helix 28	AD1	A	487	491	Right-handed 310
Helix 29	AD2	A	504	518	Right-handed alpha
Helix 30	AD3	A	526	533	Right-handed alpha
Helix 31	AD4	A	544	554	Right-handed alpha
Helix 32	AD5	A	563	567	Right-handed 310
Helix 33	AD6	B	96	100	Right-handed 310
Helix 34	AD7	B	105	117	Right-handed alpha
Helix 35	AD8	B	123	134	Right-handed alpha
Helix 36	AD9	B	139	154	Right-handed alpha
Helix 37	AE1	B	183	189	Right-handed alpha
Helix 38	AE2	B	197	202	Right-handed alpha
Helix 39	AE3	B	203	215	Right-handed alpha
Helix 40	AE4	B	225	231	Right-handed alpha
Helix 41	AE5	B	235	253	Right-handed alpha
Helix 42	AE6	B	259	271	Right-handed alpha
Helix 43	AE7	B	296	304	Right-handed alpha
Helix 44	AE8	B	312	330	Right-handed alpha
Helix 45	AE9	B	346	352	Right-handed 310
Helix 46	AF1	B	355	371	Right-handed alpha
Helix 47	AF2	B	386	408	Right-handed alpha
Helix 48	AF3	B	418	438	Right-handed alpha
Helix 49	AF4	B	439	459	Right-handed alpha
Helix 50	AF5	B	466	474	Right-handed alpha
Helix 51	AF6	B	487	491	Right-handed 310
Helix 52	AF7	B	496	500	Right-handed 310
Helix 53	AF8	B	504	518	Right-handed alpha
Helix 54	AF9	B	526	533	Right-handed alpha
Helix 55	AG1	B	544	554	Right-handed alpha
Helix 56	AG2	C	22	25	Right-handed 310
Helix 57	AG3	C	29	41	Right-handed alpha
Helix 58	AG4	C	47	57	Right-handed alpha
Helix 59	AG5	C	78	91	Right-handed alpha
Helix 60	AG6	C	114	120	Right-handed alpha
Helix 61	AG7	C	124	143	Right-handed alpha
Helix 62	AG8	C	146	148	Right-handed 310
Helix 63	AG9	C	149	159	Right-handed alpha
Helix 64	AH1	C	178	182	Right-handed 310
Helix 65	AH2	C	186	191	Right-handed 310
Helix 66	AH3	C	193	201	Right-handed alpha
Helix 67	AH4	C	204	223	Right-handed alpha
Helix 68	AH5	C	228	241	Right-handed alpha
Helix 69	AH6	C	244	246	Right-handed 310
Helix 70	AH7	C	247	256	Right-handed alpha
Helix 71	AH8	C	261	277	Right-handed alpha
Helix 72	AH9	C	296	319	Right-handed alpha
Helix 73	AI1	C	321	323	Right-handed 310
Helix 74	AI2	C	324	341	Right-handed alpha
Helix 75	AI3	C	348	361	Right-handed alpha
Helix 76	AI4	C	369	373	Right-handed 310
Helix 77	AI5	C	387	397	Right-handed alpha
Helix 78	AI6	C	405	418	Right-handed alpha
Helix 79	AI7	C	420	425	Right-handed alpha
Helix 80	AI8	C	425	431	Right-handed alpha
Helix 81	AI9	D	22	25	Right-handed 310
Helix 82	AJ1	D	29	41	Right-handed alpha
Helix 83	AJ2	D	46	57	Right-handed alpha
Helix 84	AJ3	D	75	77	Right-handed 310
Helix 85	AJ4	D	78	91	Right-handed alpha
Helix 86	AJ5	D	114	120	Right-handed alpha
Helix 87	AJ6	D	124	143	Right-handed alpha
Helix 88	AJ7	D	149	156	Right-handed alpha
Helix 89	AJ8	D	178	182	Right-handed 310
Helix 90	AJ9	D	186	190	Right-handed 310
Helix 91	AK1	D	193	201	Right-handed alpha
Helix 92	AK2	D	204	223	Right-handed alpha
Helix 93	AK3	D	228	242	Right-handed alpha
Helix 94	AK4	D	244	246	Right-handed 310
Helix 95	AK5	D	247	256	Right-handed alpha
Helix 96	AK6	D	261	276	Right-handed alpha
Helix 97	AK7	D	296	318	Right-handed alpha
Helix 98	AK8	D	324	341	Right-handed alpha
Helix 99	AK9	D	344	347	Right-handed 310
Helix 100	AL1	D	348	362	Right-handed alpha
Helix 101	AL2	D	369	373	Right-handed 310
Helix 102	AL3	D	387	397	Right-handed alpha
Helix 103	AL4	D	405	419	Right-handed alpha
Helix 104	AL5	D	420	425	Right-handed alpha
Helix 105	AL6	D	425	432	Right-handed alpha
Helix 106	AL7	E	12	24	Right-handed alpha
Helix 107	AL8	E	33	42	Right-handed alpha
Helix 108	AL9	E	56	61	Right-handed alpha
Helix 109	AM1	E	65	71	Right-handed alpha
Helix 110	AM2	E	74	79	Right-handed alpha
Helix 111	AM3	E	98	110	Right-handed alpha
Helix 112	AM4	E	128	141	Right-handed alpha
Helix 113	AM5	E	205	212	Right-handed alpha
Helix 114	AM6	E	226	246	Right-handed alpha
Helix 115	AM7	F	12	24	Right-handed alpha
Helix 116	AM8	F	33	42	Right-handed alpha
Helix 117	AM9	F	56	61	Right-handed alpha
Helix 118	AN1	F	65	71	Right-handed alpha
Helix 119	AN2	F	74	79	Right-handed alpha
Helix 120	AN3	F	98	110	Right-handed alpha
Helix 121	AN4	F	128	141	Right-handed alpha
Helix 122	AN5	F	205	212	Right-handed alpha
Helix 123	AN6	F	226	246	Right-handed alpha
Helix 124	AN7	X	23	35	Right-handed alpha
Helix 125	AN8	X	95	108	Right-handed alpha

There are 16 sheets in PDB entry 8GF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	94	95	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	118	122	anti-parallel
Strand 4	A	274	275	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	X	43	46	parallel
Strand 3	X	87	89	anti-parallel
Strand 4	X	14	18	anti-parallel
Strand 5	X	113	117	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	94	95	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	181	first strand
Strand 2	B	218	223	anti-parallel
Strand 3	B	118	122	anti-parallel
Strand 4	B	274	275	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	14	20	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	103	first strand
Strand 2	C	108	112	anti-parallel
Strand 3	C	42	46	anti-parallel
Strand 4	C	172	174	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	284	first strand
Strand 2	C	290	294	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	14	20	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	103	first strand
Strand 2	D	108	112	anti-parallel
Strand 3	D	42	45	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	281	first strand
Strand 2	D	292	294	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	88	first strand
Strand 2	E	122	127	anti-parallel
Strand 3	E	114	117	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	176	179	first strand
Strand 2	E	182	187	anti-parallel
Strand 3	E	193	199	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	88	first strand
Strand 2	F	122	127	anti-parallel
Strand 3	F	114	117	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	179	first strand
Strand 2	F	182	187	anti-parallel
Strand 3	F	193	199	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	71	74	first strand
Strand 2	X	77	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GF5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GF5