Analysis of interatomic Contacts of Structural Units in PDB entry:
8GF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GF8 entry

There are 4 chains in PDB entry 8GF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 115GLY 769
B
 ARG 115GLY 769
C
 ARG 115GLY 769
D
 ARG 115GLY 769
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are120 helices in PDB entry 8GF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 124Right-handed alpha
Helix 2
AA2
A
126 138Right-handed alpha
Helix 3
AA3
A
142 150Right-handed alpha
Helix 4
AA4
A
157 165Right-handed alpha
Helix 5
AA5
A
173 184Right-handed alpha
Helix 6
AA6
A
187 192Right-handed alpha
Helix 7
AA7
A
204 212Right-handed alpha
Helix 8
AA8
A
216 224Right-handed alpha
Helix 9
AA9
A
251 258Right-handed alpha
Helix 10
AB1
A
261 270Right-handed alpha
Helix 11
AB2
A
287 295Right-handed alpha
Helix 12
AB3
A
299 321Right-handed alpha
Helix 13
AB4
A
325 329Right-handed 310
Helix 14
AB5
A
336 344Right-handed alpha
Helix 15
AB6
A
346 355Right-handed alpha
Helix 16
AB7
A
395 402Right-handed alpha
Helix 17
AB8
A
411 415Right-handed 310
Helix 18
AB9
A
418 430Right-handed alpha
Helix 19
AC1
A
430 455Right-handed alpha
Helix 20
AC2
A
468 494Right-handed alpha
Helix 21
AC3
A
494 499Right-handed alpha
Helix 22
AC4
A
502 507Right-handed alpha
Helix 23
AC5
A
512 532Right-handed alpha
Helix 24
AC6
A
536 551Right-handed alpha
Helix 25
AC7
A
552 558Right-handed 310
Helix 26
AC8
A
559 599Right-handed alpha
Helix 27
AC9
A
631 639Right-handed alpha
Helix 28
AD1
A
656 672Right-handed alpha
Helix 29
AD2
A
674 690Right-handed alpha
Helix 30
AD3
A
694 713Right-handed alpha
Helix 31
AD4
B
116 124Right-handed alpha
Helix 32
AD5
B
126 138Right-handed alpha
Helix 33
AD6
B
142 150Right-handed alpha
Helix 34
AD7
B
157 165Right-handed alpha
Helix 35
AD8
B
173 184Right-handed alpha
Helix 36
AD9
B
187 192Right-handed alpha
Helix 37
AE1
B
204 212Right-handed alpha
Helix 38
AE2
B
216 224Right-handed alpha
Helix 39
AE3
B
251 258Right-handed alpha
Helix 40
AE4
B
261 270Right-handed alpha
Helix 41
AE5
B
287 295Right-handed alpha
Helix 42
AE6
B
299 321Right-handed alpha
Helix 43
AE7
B
325 329Right-handed 310
Helix 44
AE8
B
336 344Right-handed alpha
Helix 45
AE9
B
346 355Right-handed alpha
Helix 46
AF1
B
395 402Right-handed alpha
Helix 47
AF2
B
411 415Right-handed 310
Helix 48
AF3
B
418 430Right-handed alpha
Helix 49
AF4
B
430 455Right-handed alpha
Helix 50
AF5
B
468 494Right-handed alpha
Helix 51
AF6
B
494 499Right-handed alpha
Helix 52
AF7
B
502 507Right-handed alpha
Helix 53
AF8
B
512 532Right-handed alpha
Helix 54
AF9
B
536 551Right-handed alpha
Helix 55
AG1
B
552 558Right-handed 310
Helix 56
AG2
B
559 599Right-handed alpha
Helix 57
AG3
B
631 639Right-handed alpha
Helix 58
AG4
B
656 672Right-handed alpha
Helix 59
AG5
B
674 690Right-handed alpha
Helix 60
AG6
B
694 713Right-handed alpha
Helix 61
AG7
C
116 124Right-handed alpha
Helix 62
AG8
C
126 138Right-handed alpha
Helix 63
AG9
C
142 150Right-handed alpha
Helix 64
AH1
C
157 165Right-handed alpha
Helix 65
AH2
C
173 184Right-handed alpha
Helix 66
AH3
C
187 192Right-handed alpha
Helix 67
AH4
C
204 212Right-handed alpha
Helix 68
AH5
C
216 224Right-handed alpha
Helix 69
AH6
C
251 258Right-handed alpha
Helix 70
AH7
C
261 270Right-handed alpha
Helix 71
AH8
C
287 295Right-handed alpha
Helix 72
AH9
C
299 321Right-handed alpha
Helix 73
AI1
C
325 329Right-handed 310
Helix 74
AI2
C
336 344Right-handed alpha
Helix 75
AI3
C
346 355Right-handed alpha
Helix 76
AI4
C
395 402Right-handed alpha
Helix 77
AI5
C
411 415Right-handed 310
Helix 78
AI6
C
418 430Right-handed alpha
Helix 79
AI7
C
430 455Right-handed alpha
Helix 80
AI8
C
468 494Right-handed alpha
Helix 81
AI9
C
494 499Right-handed alpha
Helix 82
AJ1
C
502 507Right-handed alpha
Helix 83
AJ2
C
512 532Right-handed alpha
Helix 84
AJ3
C
536 551Right-handed alpha
Helix 85
AJ4
C
552 558Right-handed 310
Helix 86
AJ5
C
559 599Right-handed alpha
Helix 87
AJ6
C
631 639Right-handed alpha
Helix 88
AJ7
C
656 672Right-handed alpha
Helix 89
AJ8
C
674 690Right-handed alpha
Helix 90
AJ9
C
694 713Right-handed alpha
Helix 91
AK1
D
116 124Right-handed alpha
Helix 92
AK2
D
126 138Right-handed alpha
Helix 93
AK3
D
142 150Right-handed alpha
Helix 94
AK4
D
157 165Right-handed alpha
Helix 95
AK5
D
173 184Right-handed alpha
Helix 96
AK6
D
187 192Right-handed alpha
Helix 97
AK7
D
204 212Right-handed alpha
Helix 98
AK8
D
216 224Right-handed alpha
Helix 99
AK9
D
251 258Right-handed alpha
Helix 100
AL1
D
261 270Right-handed alpha
Helix 101
AL2
D
287 295Right-handed alpha
Helix 102
AL3
D
299 321Right-handed alpha
Helix 103
AL4
D
325 329Right-handed 310
Helix 104
AL5
D
336 344Right-handed alpha
Helix 105
AL6
D
346 355Right-handed alpha
Helix 106
AL7
D
395 402Right-handed alpha
Helix 107
AL8
D
411 415Right-handed 310
Helix 108
AL9
D
418 430Right-handed alpha
Helix 109
AM1
D
430 455Right-handed alpha
Helix 110
AM2
D
468 494Right-handed alpha
Helix 111
AM3
D
494 499Right-handed alpha
Helix 112
AM4
D
502 507Right-handed alpha
Helix 113
AM5
D
512 532Right-handed alpha
Helix 114
AM6
D
536 551Right-handed alpha
Helix 115
AM7
D
552 558Right-handed 310
Helix 116
AM8
D
559 599Right-handed alpha
Helix 117
AM9
D
631 639Right-handed alpha
Helix 118
AN1
D
656 672Right-handed alpha
Helix 119
AN2
D
674 690Right-handed alpha
Helix 120
AN3
D
694 713Right-handed alpha
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There are 4 sheets in PDB entry 8GF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 374first strand
Strand 2
A
378 384anti-parallel
Strand 3
A
740 748anti-parallel
Strand 4
A
725 727anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 374first strand
Strand 2
B
378 384anti-parallel
Strand 3
B
740 748anti-parallel
Strand 4
B
725 727anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
369 374first strand
Strand 2
C
378 384anti-parallel
Strand 3
C
740 748anti-parallel
Strand 4
C
725 727anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
369 374first strand
Strand 2
D
378 384anti-parallel
Strand 3
D
740 748anti-parallel
Strand 4
D
725 727anti-parallel
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