Analysis of interatomic Contacts of Structural Units in PDB entry:
8GFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GFA entry

There are 4 chains in PDB entry 8GFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 199ASN 754
B
 TYR 199ASN 754
C
 TYR 199ASN 754
D
 TYR 199ASN 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 8GFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
204 212Right-handed alpha
Helix 2
AA2
A
214 224Right-handed alpha
Helix 3
AA3
A
234 238Right-handed 310
Helix 4
AA4
A
251 258Right-handed alpha
Helix 5
AA5
A
261 271Right-handed alpha
Helix 6
AA6
A
287 295Right-handed alpha
Helix 7
AA7
A
299 321Right-handed alpha
Helix 8
AA8
A
336 345Right-handed alpha
Helix 9
AA9
A
346 355Right-handed alpha
Helix 10
AB1
A
396 401Right-handed alpha
Helix 11
AB2
A
409 414Right-handed alpha
Helix 12
AB3
A
418 430Right-handed alpha
Helix 13
AB4
A
430 455Right-handed alpha
Helix 14
AB5
A
468 499Right-handed alpha
Helix 15
AB6
A
504 510Right-handed alpha
Helix 16
AB7
A
510 532Right-handed alpha
Helix 17
AB8
A
536 551Right-handed alpha
Helix 18
AB9
A
552 558Right-handed 310
Helix 19
AC1
A
559 575Right-handed alpha
Helix 20
AC2
A
575 599Right-handed alpha
Helix 21
AC3
A
630 641Right-handed alpha
Helix 22
AC4
A
642 644Right-handed 310
Helix 23
AC5
A
656 672Right-handed alpha
Helix 24
AC6
A
674 715Right-handed alpha
Helix 25
AC7
B
204 212Right-handed alpha
Helix 26
AC8
B
214 224Right-handed alpha
Helix 27
AC9
B
234 238Right-handed 310
Helix 28
AD1
B
251 258Right-handed alpha
Helix 29
AD2
B
261 271Right-handed alpha
Helix 30
AD3
B
287 295Right-handed alpha
Helix 31
AD4
B
299 321Right-handed alpha
Helix 32
AD5
B
336 345Right-handed alpha
Helix 33
AD6
B
346 355Right-handed alpha
Helix 34
AD7
B
396 401Right-handed alpha
Helix 35
AD8
B
409 414Right-handed alpha
Helix 36
AD9
B
418 430Right-handed alpha
Helix 37
AE1
B
430 455Right-handed alpha
Helix 38
AE2
B
468 499Right-handed alpha
Helix 39
AE3
B
504 510Right-handed alpha
Helix 40
AE4
B
510 532Right-handed alpha
Helix 41
AE5
B
536 551Right-handed alpha
Helix 42
AE6
B
552 558Right-handed 310
Helix 43
AE7
B
559 575Right-handed alpha
Helix 44
AE8
B
575 599Right-handed alpha
Helix 45
AE9
B
630 641Right-handed alpha
Helix 46
AF1
B
642 644Right-handed 310
Helix 47
AF2
B
656 672Right-handed alpha
Helix 48
AF3
B
674 715Right-handed alpha
Helix 49
AF4
C
204 212Right-handed alpha
Helix 50
AF5
C
214 224Right-handed alpha
Helix 51
AF6
C
234 238Right-handed 310
Helix 52
AF7
C
251 258Right-handed alpha
Helix 53
AF8
C
261 271Right-handed alpha
Helix 54
AF9
C
287 295Right-handed alpha
Helix 55
AG1
C
299 321Right-handed alpha
Helix 56
AG2
C
336 345Right-handed alpha
Helix 57
AG3
C
346 355Right-handed alpha
Helix 58
AG4
C
396 401Right-handed alpha
Helix 59
AG5
C
409 414Right-handed alpha
Helix 60
AG6
C
418 430Right-handed alpha
Helix 61
AG7
C
430 455Right-handed alpha
Helix 62
AG8
C
468 499Right-handed alpha
Helix 63
AG9
C
504 510Right-handed alpha
Helix 64
AH1
C
510 532Right-handed alpha
Helix 65
AH2
C
536 551Right-handed alpha
Helix 66
AH3
C
552 558Right-handed 310
Helix 67
AH4
C
559 575Right-handed alpha
Helix 68
AH5
C
575 599Right-handed alpha
Helix 69
AH6
C
630 641Right-handed alpha
Helix 70
AH7
C
642 644Right-handed 310
Helix 71
AH8
C
656 672Right-handed alpha
Helix 72
AH9
C
674 715Right-handed alpha
Helix 73
AI1
D
204 212Right-handed alpha
Helix 74
AI2
D
214 224Right-handed alpha
Helix 75
AI3
D
234 238Right-handed 310
Helix 76
AI4
D
251 258Right-handed alpha
Helix 77
AI5
D
261 271Right-handed alpha
Helix 78
AI6
D
287 295Right-handed alpha
Helix 79
AI7
D
299 321Right-handed alpha
Helix 80
AI8
D
336 345Right-handed alpha
Helix 81
AI9
D
346 355Right-handed alpha
Helix 82
AJ1
D
396 401Right-handed alpha
Helix 83
AJ2
D
409 414Right-handed alpha
Helix 84
AJ3
D
418 430Right-handed alpha
Helix 85
AJ4
D
430 455Right-handed alpha
Helix 86
AJ5
D
468 499Right-handed alpha
Helix 87
AJ6
D
504 510Right-handed alpha
Helix 88
AJ7
D
510 532Right-handed alpha
Helix 89
AJ8
D
536 551Right-handed alpha
Helix 90
AJ9
D
552 558Right-handed 310
Helix 91
AK1
D
559 575Right-handed alpha
Helix 92
AK2
D
575 599Right-handed alpha
Helix 93
AK3
D
630 641Right-handed alpha
Helix 94
AK4
D
642 644Right-handed 310
Helix 95
AK5
D
656 672Right-handed alpha
Helix 96
AK6
D
674 715Right-handed alpha
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There are 4 sheets in PDB entry 8GFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 375first strand
Strand 2
A
378 384anti-parallel
Strand 3
A
737 748anti-parallel
Strand 4
A
725 731anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 375first strand
Strand 2
B
378 384anti-parallel
Strand 3
B
737 748anti-parallel
Strand 4
B
725 731anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
370 375first strand
Strand 2
C
378 384anti-parallel
Strand 3
C
737 748anti-parallel
Strand 4
C
725 731anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
370 375first strand
Strand 2
D
378 384anti-parallel
Strand 3
D
737 748anti-parallel
Strand 4
D
725 731anti-parallel
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