Analysis of interatomic Contacts of Structural Units in PDB entry:
8GFT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GFT entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8GFT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 10	ASP 691
B	GLU 11	GLU 694
C	VAL 2	VAL 12
C	ASP 14	LYS 260
D	ASN 404	HIS 611
E	GLY 23	HIS 481

There are 98 helices in PDB entry 8GFT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	37	59	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed 310
Helix 4	AA4	A	94	102	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	131	138	Right-handed 310
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	194	206	Right-handed alpha
Helix 9	AA9	A	287	291	Right-handed 310
Helix 10	AB1	A	292	296	Right-handed 310
Helix 11	AB2	A	297	310	Right-handed alpha
Helix 12	AB3	A	371	375	Right-handed 310
Helix 13	AB4	A	398	420	Right-handed alpha
Helix 14	AB5	A	422	444	Right-handed alpha
Helix 15	AB6	A	447	452	Right-handed alpha
Helix 16	AB7	A	469	475	Right-handed alpha
Helix 17	AB8	A	490	496	Right-handed alpha
Helix 18	AB9	A	497	499	Right-handed 310
Helix 19	AC1	A	500	506	Right-handed alpha
Helix 20	AC2	A	517	523	Right-handed alpha
Helix 21	AC3	A	546	560	Right-handed alpha
Helix 22	AC4	A	560	571	Right-handed alpha
Helix 23	AC5	A	599	608	Right-handed alpha
Helix 24	AC6	A	613	621	Right-handed 310
Helix 25	AC7	A	632	645	Right-handed alpha
Helix 26	AC8	A	648	666	Right-handed alpha
Helix 27	AC9	A	672	689	Right-handed alpha
Helix 28	AD1	B	21	32	Right-handed alpha
Helix 29	AD2	B	38	59	Right-handed alpha
Helix 30	AD3	B	60	61	Right-handed 310
Helix 31	AD4	B	62	69	Right-handed 310
Helix 32	AD5	B	95	103	Right-handed alpha
Helix 33	AD6	B	109	118	Right-handed alpha
Helix 34	AD7	B	132	139	Right-handed 310
Helix 35	AD8	B	188	194	Right-handed 310
Helix 36	AD9	B	195	207	Right-handed alpha
Helix 37	AE1	B	280	284	Right-handed 310
Helix 38	AE2	B	287	291	Right-handed 310
Helix 39	AE3	B	292	296	Right-handed 310
Helix 40	AE4	B	297	310	Right-handed alpha
Helix 41	AE5	B	371	375	Right-handed 310
Helix 42	AE6	B	398	420	Right-handed alpha
Helix 43	AE7	B	422	444	Right-handed alpha
Helix 44	AE8	B	447	455	Right-handed alpha
Helix 45	AE9	B	468	475	Right-handed alpha
Helix 46	AF1	B	490	496	Right-handed alpha
Helix 47	AF2	B	497	499	Right-handed 310
Helix 48	AF3	B	500	506	Right-handed alpha
Helix 49	AF4	B	517	525	Right-handed alpha
Helix 50	AF5	B	546	571	Right-handed alpha
Helix 51	AF6	B	572	575	Right-handed 310
Helix 52	AF7	B	599	607	Right-handed alpha
Helix 53	AF8	B	616	621	Right-handed alpha
Helix 54	AF9	B	632	645	Right-handed alpha
Helix 55	AG1	B	648	666	Right-handed alpha
Helix 56	AG2	B	672	689	Right-handed alpha
Helix 57	AG3	C	4	8	Right-handed 310
Helix 58	AG4	C	24	73	Right-handed alpha
Helix 59	AG5	C	76	110	Right-handed alpha
Helix 60	AG6	C	139	151	Right-handed alpha
Helix 61	AG7	C	151	156	Right-handed alpha
Helix 62	AG8	C	157	161	Right-handed 310
Helix 63	AG9	C	173	178	Right-handed alpha
Helix 64	AH1	C	179	182	Right-handed 310
Helix 65	AH2	C	183	193	Right-handed alpha
Helix 66	AH3	C	194	200	Right-handed alpha
Helix 67	AH4	C	202	227	Right-handed alpha
Helix 68	AH5	C	229	233	Right-handed 310
Helix 69	AH6	C	234	243	Right-handed alpha
Helix 70	AH7	C	251	259	Right-handed alpha
Helix 71	AH8	D	428	435	Right-handed alpha
Helix 72	AH9	D	441	462	Right-handed alpha
Helix 73	AI1	D	478	480	Right-handed 310
Helix 74	AI2	D	513	518	Right-handed alpha
Helix 75	AI3	D	526	542	Right-handed alpha
Helix 76	AI4	D	553	563	Right-handed alpha
Helix 77	AI5	D	569	573	Right-handed 310
Helix 78	AI6	D	578	589	Right-handed alpha
Helix 79	AI7	D	592	596	Right-handed 310
Helix 80	AI8	D	598	611	Right-handed alpha
Helix 81	AI9	E	24	41	Right-handed alpha
Helix 82	AJ1	E	43	58	Right-handed alpha
Helix 83	AJ2	E	61	75	Right-handed alpha
Helix 84	AJ3	E	77	92	Right-handed alpha
Helix 85	AJ4	E	95	109	Right-handed alpha
Helix 86	AJ5	E	111	126	Right-handed alpha
Helix 87	AJ6	E	131	153	Right-handed alpha
Helix 88	AJ7	E	165	170	Right-handed 310
Helix 89	AJ8	E	187	200	Right-handed alpha
Helix 90	AJ9	E	205	221	Right-handed alpha
Helix 91	AK1	E	247	257	Right-handed alpha
Helix 92	AK2	E	278	293	Right-handed alpha
Helix 93	AK3	E	306	313	Right-handed alpha
Helix 94	AK4	E	314	323	Right-handed alpha
Helix 95	AK5	E	325	337	Right-handed alpha
Helix 96	AK6	E	362	368	Right-handed alpha
Helix 97	AK7	E	379	387	Right-handed alpha
Helix 98	AK8	E	407	419	Right-handed alpha

There are 14 sheets in PDB entry 8GFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	B	165	170	anti-parallel
Strand 3	B	156	160	anti-parallel
Strand 4	B	141	149	anti-parallel
Strand 5	B	179	186	anti-parallel
Strand 6	B	84	89	anti-parallel
Strand 7	B	74	79	anti-parallel
Strand 8	B	214	218	parallel
Strand 9	B	277	279	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	105	106	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	73	78	parallel
Strand 4	A	83	88	anti-parallel
Strand 5	A	178	185	anti-parallel
Strand 6	A	140	148	anti-parallel
Strand 7	A	154	159	anti-parallel
Strand 8	A	164	169	anti-parallel
Strand 9	B	13	17	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	19	20	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	271	273	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	329	336	anti-parallel
Strand 3	A	378	383	anti-parallel
Strand 4	A	353	357	parallel
Strand 5	A	360	363	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	456	459	anti-parallel
Strand 3	A	510	513	anti-parallel
Strand 4	A	482	487	parallel
Strand 5	A	531	535	parallel
Strand 6	A	527	528	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	580	first strand
Strand 2	A	624	628	parallel
Strand 3	A	589	593	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	363	first strand
Strand 2	B	353	357	anti-parallel
Strand 3	B	378	383	parallel
Strand 4	B	329	336	anti-parallel
Strand 5	B	315	325	anti-parallel
Strand 6	C	120	129	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	510	513	anti-parallel
Strand 3	B	482	487	parallel
Strand 4	B	531	535	parallel
Strand 5	B	527	528	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	580	first strand
Strand 2	B	624	628	parallel
Strand 3	B	589	593	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	474	476	first strand
Strand 2	D	482	484	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	229	first strand
Strand 2	E	341	344	parallel
Strand 3	E	348	350	anti-parallel
Strand 4	E	422	425	parallel
Strand 5	E	442	444	parallel
Strand 6	E	436	437	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	299	first strand
Strand 2	E	267	268	parallel
Strand 3	E	236	240	parallel
Strand 4	E	459	465	anti-parallel
Strand 5	E	468	476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GFT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GFT