Analysis of interatomic Contacts of Structural Units in PDB entry:
8GGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GGD entry

There are 5 chains in PDB entry 8GGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1LEU 323
B
 MET 1LEU 323
C
 MET 1LEU 323
A
 MET 1LEU 323
E
 TYR 332ARG 640
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8GGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
11 22Right-handed alpha
Helix 2
AA2
D
38 47Right-handed alpha
Helix 3
AA3
D
69 76Right-handed alpha
Helix 4
AA4
D
95 115Right-handed alpha
Helix 5
AA5
D
129 132Right-handed 310
Helix 6
AA6
D
133 145Right-handed alpha
Helix 7
AA7
D
157 171Right-handed alpha
Helix 8
AA8
D
194 197Right-handed 310
Helix 9
AA9
D
203 225Right-handed alpha
Helix 10
AB1
D
232 251Right-handed alpha
Helix 11
AB2
D
294 322Right-handed alpha
Helix 12
AB3
B
14 22Right-handed alpha
Helix 13
AB4
B
38 47Right-handed alpha
Helix 14
AB5
B
69 74Right-handed alpha
Helix 15
AB6
B
95 116Right-handed alpha
Helix 16
AB7
B
129 145Right-handed alpha
Helix 17
AB8
B
157 171Right-handed alpha
Helix 18
AB9
B
204 225Right-handed alpha
Helix 19
AC1
B
232 251Right-handed alpha
Helix 20
AC2
B
294 320Right-handed alpha
Helix 21
AC3
B
321 323Right-handed 310
Helix 22
AC4
C
13 23Right-handed alpha
Helix 23
AC5
C
38 47Right-handed alpha
Helix 24
AC6
C
69 75Right-handed alpha
Helix 25
AC7
C
99 116Right-handed alpha
Helix 26
AC8
C
129 145Right-handed alpha
Helix 27
AC9
C
156 169Right-handed alpha
Helix 28
AD1
C
194 197Right-handed 310
Helix 29
AD2
C
203 216Right-handed alpha
Helix 30
AD3
C
219 225Right-handed alpha
Helix 31
AD4
C
234 252Right-handed alpha
Helix 32
AD5
C
299 322Right-handed alpha
Helix 33
AD6
A
14 23Right-handed alpha
Helix 34
AD7
A
38 47Right-handed alpha
Helix 35
AD8
A
69 76Right-handed alpha
Helix 36
AD9
A
95 116Right-handed alpha
Helix 37
AE1
A
132 145Right-handed alpha
Helix 38
AE2
A
148 152Right-handed 310
Helix 39
AE3
A
156 171Right-handed alpha
Helix 40
AE4
A
203 216Right-handed alpha
Helix 41
AE5
A
217 225Right-handed alpha
Helix 42
AE6
A
232 252Right-handed alpha
Helix 43
AE7
A
296 316Right-handed alpha
Helix 44
AE8
E
338 344Right-handed alpha
Helix 45
AE9
E
354 359Right-handed 310
Helix 46
AF1
E
362 373Right-handed alpha
Helix 47
AF2
E
376 387Right-handed alpha
Helix 48
AF3
E
392 406Right-handed alpha
Helix 49
AF4
E
413 423Right-handed alpha
Helix 50
AF5
E
427 438Right-handed alpha
Helix 51
AF6
E
444 456Right-handed alpha
Helix 52
AF7
E
492 502Right-handed alpha
Helix 53
AF8
E
510 523Right-handed alpha
Helix 54
AF9
E
526 541Right-handed alpha
Helix 55
AG1
E
544 557Right-handed alpha
Helix 56
AG2
E
564 575Right-handed alpha
Helix 57
AG3
E
578 592Right-handed alpha
Helix 58
AG4
E
598 610Right-handed alpha
Helix 59
AG5
E
614 618Right-handed 310
Helix 60
AG6
E
624 638Right-handed alpha
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There are 13 sheets in PDB entry 8GGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 58first strand
Strand 2
D
32 34parallel
Strand 3
D
4 7parallel
Strand 4
D
81 84parallel
Strand 5
D
122 125parallel
Strand 6
D
153 154parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
181 183first strand
Strand 2
D
190 192anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
257 263first strand
Strand 2
D
272 279anti-parallel
Strand 3
D
284 286anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
81 84parallel
Strand 3
B
122 123parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 35first strand
Strand 2
B
55 60parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
190 192anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 262first strand
Strand 2
B
273 280anti-parallel
Strand 3
B
283 287anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 60first strand
Strand 2
C
29 35parallel
Strand 3
C
5 7parallel
Strand 4
C
81 84parallel
Strand 5
C
122 125parallel
Strand 6
C
153 154parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 183first strand
Strand 2
C
190 192anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 259first strand
Strand 2
C
276 278anti-parallel
Strand 3
C
286 287anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
30 34parallel
Strand 3
A
3 7parallel
Strand 4
A
81 84parallel
Strand 5
A
122 125parallel
Strand 6
A
153 154parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
191 192anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
277 278anti-parallel
Strand 3
A
286 287anti-parallel
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