Analysis of interatomic Contacts of Structural Units in PDB entry:
8GGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GGF entry

There are 4 chains in PDB entry 8GGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 394
B	GLU 3	ASN 340
G	THR 6	ARG 62
R	GLY 35	ASN 322

There are 30 helices in PDB entry 8GGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	38	Right-handed alpha
Helix 2	AA2	A	52	65	Right-handed alpha
Helix 3	AA3	A	89	113	Right-handed alpha
Helix 4	AA4	A	124	135	Right-handed alpha
Helix 5	AA5	A	144	156	Right-handed alpha
Helix 6	AA6	A	156	165	Right-handed alpha
Helix 7	AA7	A	174	180	Right-handed alpha
Helix 8	AA8	A	193	199	Right-handed alpha
Helix 9	AA9	A	232	237	Right-handed 310
Helix 10	AB1	A	264	278	Right-handed alpha
Helix 11	AB2	A	293	303	Right-handed alpha
Helix 12	AB3	A	307	312	Right-handed alpha
Helix 13	AB4	A	313	316	Right-handed 310
Helix 14	AB5	A	331	352	Right-handed alpha
Helix 15	AB6	A	368	383	Right-handed alpha
Helix 16	AB7	B	4	26	Right-handed alpha
Helix 17	AB8	B	29	34	Right-handed alpha
Helix 18	AB9	B	128	132	Right-handed 310
Helix 19	AC1	G	7	24	Right-handed alpha
Helix 20	AC2	G	29	44	Right-handed alpha
Helix 21	AC3	R	36	55	Right-handed alpha
Helix 22	AC4	R	66	78	Right-handed alpha
Helix 23	AC5	R	87	91	Right-handed 310
Helix 24	AC6	R	102	137	Right-handed alpha
Helix 25	AC7	R	157	171	Right-handed alpha
Helix 26	AC8	R	179	187	Right-handed alpha
Helix 27	AC9	R	201	229	Right-handed alpha
Helix 28	AD1	R	270	296	Right-handed alpha
Helix 29	AD2	R	304	314	Right-handed alpha
Helix 30	AD3	R	315	322	Right-handed alpha

There are 8 sheets in PDB entry 8GGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	210	first strand
Strand 2	A	219	222	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	93	94	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	114	first strand
Strand 2	B	122	125	anti-parallel
Strand 3	B	135	137	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	168	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	221	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	285	288	anti-parallel
Strand 3	B	294	296	anti-parallel
Strand 4	B	306	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GGF