Analysis of interatomic Contacts of Structural Units in PDB entry:
8GH2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GH2 entry

There are 6 chains in PDB entry 8GH2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 323
C	MET 1	LEU 323
B	MET 1	LEU 323
D	MET 1	LEU 323
F	VAL 325	GLN 649
E	GLN 336	TRP 648

There are 79 helices in PDB entry 8GH2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	22	Right-handed alpha
Helix 2	AA2	A	39	47	Right-handed alpha
Helix 3	AA3	A	71	76	Right-handed alpha
Helix 4	AA4	A	95	116	Right-handed alpha
Helix 5	AA5	A	129	145	Right-handed alpha
Helix 6	AA6	A	156	171	Right-handed alpha
Helix 7	AA7	A	194	197	Right-handed 310
Helix 8	AA8	A	203	216	Right-handed alpha
Helix 9	AA9	A	217	225	Right-handed alpha
Helix 10	AB1	A	233	252	Right-handed alpha
Helix 11	AB2	A	294	316	Right-handed alpha
Helix 12	AB3	C	11	22	Right-handed alpha
Helix 13	AB4	C	38	46	Right-handed alpha
Helix 14	AB5	C	69	76	Right-handed alpha
Helix 15	AB6	C	95	116	Right-handed alpha
Helix 16	AB7	C	129	145	Right-handed alpha
Helix 17	AB8	C	156	171	Right-handed alpha
Helix 18	AB9	C	186	190	Right-handed 310
Helix 19	AC1	C	203	226	Right-handed alpha
Helix 20	AC2	C	232	251	Right-handed alpha
Helix 21	AC3	C	294	319	Right-handed alpha
Helix 22	AC4	B	15	23	Right-handed alpha
Helix 23	AC5	B	38	46	Right-handed alpha
Helix 24	AC6	B	69	75	Right-handed alpha
Helix 25	AC7	B	97	116	Right-handed alpha
Helix 26	AC8	B	129	145	Right-handed alpha
Helix 27	AC9	B	156	171	Right-handed alpha
Helix 28	AD1	B	186	188	Right-handed 310
Helix 29	AD2	B	203	216	Right-handed alpha
Helix 30	AD3	B	217	225	Right-handed alpha
Helix 31	AD4	B	232	252	Right-handed alpha
Helix 32	AD5	B	294	323	Right-handed alpha
Helix 33	AD6	D	14	23	Right-handed alpha
Helix 34	AD7	D	38	46	Right-handed alpha
Helix 35	AD8	D	47	49	Right-handed 310
Helix 36	AD9	D	71	76	Right-handed alpha
Helix 37	AE1	D	97	113	Right-handed alpha
Helix 38	AE2	D	114	116	Right-handed 310
Helix 39	AE3	D	132	145	Right-handed alpha
Helix 40	AE4	D	156	171	Right-handed alpha
Helix 41	AE5	D	186	188	Right-handed 310
Helix 42	AE6	D	203	216	Right-handed alpha
Helix 43	AE7	D	217	225	Right-handed alpha
Helix 44	AE8	D	231	252	Right-handed alpha
Helix 45	AE9	D	294	316	Right-handed alpha
Helix 46	AF1	F	326	346	Right-handed alpha
Helix 47	AF2	F	364	369	Right-handed alpha
Helix 48	AF3	F	376	387	Right-handed alpha
Helix 49	AF4	F	392	406	Right-handed alpha
Helix 50	AF5	F	410	421	Right-handed alpha
Helix 51	AF6	F	431	440	Right-handed alpha
Helix 52	AF7	F	442	456	Right-handed alpha
Helix 53	AF8	F	493	502	Right-handed alpha
Helix 54	AF9	F	510	524	Right-handed alpha
Helix 55	AG1	F	526	539	Right-handed alpha
Helix 56	AG2	F	544	557	Right-handed alpha
Helix 57	AG3	F	560	575	Right-handed alpha
Helix 58	AG4	F	578	592	Right-handed alpha
Helix 59	AG5	F	594	610	Right-handed alpha
Helix 60	AG6	F	620	623	Right-handed 310
Helix 61	AG7	F	624	632	Right-handed alpha
Helix 62	AG8	F	634	639	Right-handed alpha
Helix 63	AG9	F	643	648	Right-handed 310
Helix 64	AH1	E	337	346	Right-handed alpha
Helix 65	AH2	E	362	370	Right-handed alpha
Helix 66	AH3	E	374	387	Right-handed alpha
Helix 67	AH4	E	394	406	Right-handed alpha
Helix 68	AH5	E	410	423	Right-handed alpha
Helix 69	AH6	E	427	441	Right-handed alpha
Helix 70	AH7	E	443	456	Right-handed alpha
Helix 71	AH8	E	516	524	Right-handed alpha
Helix 72	AH9	E	526	541	Right-handed alpha
Helix 73	AI1	E	544	558	Right-handed alpha
Helix 74	AI2	E	562	566	Right-handed 310
Helix 75	AI3	E	570	574	Right-handed 310
Helix 76	AI4	E	578	593	Right-handed alpha
Helix 77	AI5	E	596	610	Right-handed alpha
Helix 78	AI6	E	621	625	Right-handed 310
Helix 79	AI7	E	626	638	Right-handed alpha

There are 12 sheets in PDB entry 8GH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	32	34	parallel
Strand 3	A	4	7	parallel
Strand 4	A	81	84	parallel
Strand 5	A	122	125	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	190	192	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	263	first strand
Strand 2	A	272	278	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	58	first strand
Strand 2	C	30	34	parallel
Strand 3	C	3	7	parallel
Strand 4	C	81	84	parallel
Strand 5	C	124	125	parallel
Strand 6	C	153	154	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	263	first strand
Strand 2	C	272	280	anti-parallel
Strand 3	C	283	287	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	60	first strand
Strand 2	B	30	35	parallel
Strand 3	B	3	5	parallel
Strand 4	B	81	82	parallel
Strand 5	B	122	123	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	190	192	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	262	first strand
Strand 2	B	273	280	anti-parallel
Strand 3	B	283	287	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	29	32	parallel
Strand 3	D	3	6	parallel
Strand 4	D	81	83	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	153	154	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	190	191	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	260	first strand
Strand 2	D	275	280	anti-parallel
Strand 3	D	283	287	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GH2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GH2