Analysis of interatomic Contacts of Structural Units in PDB entry:
8GH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GH3 entry

There are 6 chains in PDB entry 8GH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 323
B	MET 1	LEU 323
C	MET 1	LEU 323
D	MET 1	LEU 323
E	ASN 354	GLU 658
F	ASN 354	MET 638

There are 73 helices in PDB entry 8GH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	22	Right-handed alpha
Helix 2	AA2	A	38	47	Right-handed alpha
Helix 3	AA3	A	69	76	Right-handed alpha
Helix 4	AA4	A	95	116	Right-handed alpha
Helix 5	AA5	A	129	145	Right-handed alpha
Helix 6	AA6	A	156	171	Right-handed alpha
Helix 7	AA7	A	194	197	Right-handed 310
Helix 8	AA8	A	207	225	Right-handed alpha
Helix 9	AA9	A	233	252	Right-handed alpha
Helix 10	AB1	A	294	317	Right-handed alpha
Helix 11	AB2	B	11	23	Right-handed alpha
Helix 12	AB3	B	38	47	Right-handed alpha
Helix 13	AB4	B	69	76	Right-handed alpha
Helix 14	AB5	B	100	118	Right-handed alpha
Helix 15	AB6	B	129	145	Right-handed alpha
Helix 16	AB7	B	156	169	Right-handed alpha
Helix 17	AB8	B	203	216	Right-handed alpha
Helix 18	AB9	B	217	225	Right-handed alpha
Helix 19	AC1	B	232	251	Right-handed alpha
Helix 20	AC2	B	294	322	Right-handed alpha
Helix 21	AC3	C	11	25	Right-handed alpha
Helix 22	AC4	C	38	46	Right-handed alpha
Helix 23	AC5	C	69	74	Right-handed alpha
Helix 24	AC6	C	90	94	Right-handed 310
Helix 25	AC7	C	95	116	Right-handed alpha
Helix 26	AC8	C	129	144	Right-handed alpha
Helix 27	AC9	C	157	171	Right-handed alpha
Helix 28	AD1	C	203	226	Right-handed alpha
Helix 29	AD2	C	231	251	Right-handed alpha
Helix 30	AD3	C	294	319	Right-handed alpha
Helix 31	AD4	D	11	23	Right-handed alpha
Helix 32	AD5	D	38	46	Right-handed alpha
Helix 33	AD6	D	95	118	Right-handed alpha
Helix 34	AD7	D	129	143	Right-handed alpha
Helix 35	AD8	D	156	171	Right-handed alpha
Helix 36	AD9	D	203	216	Right-handed alpha
Helix 37	AE1	D	216	225	Right-handed alpha
Helix 38	AE2	D	232	252	Right-handed alpha
Helix 39	AE3	D	294	317	Right-handed alpha
Helix 40	AE4	E	362	373	Right-handed alpha
Helix 41	AE5	E	374	387	Right-handed alpha
Helix 42	AE6	E	392	406	Right-handed alpha
Helix 43	AE7	E	408	422	Right-handed alpha
Helix 44	AE8	E	428	441	Right-handed alpha
Helix 45	AE9	E	442	455	Right-handed alpha
Helix 46	AF1	E	512	524	Right-handed alpha
Helix 47	AF2	E	529	541	Right-handed alpha
Helix 48	AF3	E	544	557	Right-handed alpha
Helix 49	AF4	E	560	575	Right-handed alpha
Helix 50	AF5	E	578	591	Right-handed alpha
Helix 51	AF6	E	594	611	Right-handed alpha
Helix 52	AF7	E	621	623	Right-handed 310
Helix 53	AF8	E	624	629	Right-handed alpha
Helix 54	AF9	E	630	632	Right-handed 310
Helix 55	AG1	E	633	638	Right-handed 310
Helix 56	AG2	E	640	645	Right-handed alpha
Helix 57	AG3	E	646	649	Right-handed 310
Helix 58	AG4	F	354	359	Right-handed 310
Helix 59	AG5	F	361	373	Right-handed alpha
Helix 60	AG6	F	374	389	Right-handed alpha
Helix 61	AG7	F	392	406	Right-handed alpha
Helix 62	AG8	F	408	423	Right-handed alpha
Helix 63	AG9	F	426	441	Right-handed alpha
Helix 64	AH1	F	442	457	Right-handed alpha
Helix 65	AH2	F	490	507	Right-handed alpha
Helix 66	AH3	F	510	524	Right-handed alpha
Helix 67	AH4	F	526	541	Right-handed alpha
Helix 68	AH5	F	545	558	Right-handed alpha
Helix 69	AH6	F	560	575	Right-handed alpha
Helix 70	AH7	F	578	592	Right-handed alpha
Helix 71	AH8	F	594	610	Right-handed alpha
Helix 72	AH9	F	613	617	Right-handed 310
Helix 73	AI1	F	619	638	Right-handed alpha

There are 17 sheets in PDB entry 8GH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	59	first strand
Strand 2	A	30	34	parallel
Strand 3	A	4	7	parallel
Strand 4	A	81	84	parallel
Strand 5	A	122	125	parallel
Strand 6	A	153	154	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	191	192	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	257	263	first strand
Strand 2	A	272	279	anti-parallel
Strand 3	A	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	82	84	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	30	first strand
Strand 2	B	54	55	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	58	60	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	152	154	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	190	192	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	263	first strand
Strand 2	B	272	278	anti-parallel
Strand 3	B	286	287	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	29	32	parallel
Strand 3	C	56	57	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	84	first strand
Strand 2	C	122	125	parallel
Strand 3	C	152	154	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	190	192	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	263	first strand
Strand 2	C	272	278	anti-parallel
Strand 3	C	286	287	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	30	34	parallel
Strand 3	D	3	7	parallel
Strand 4	D	81	84	parallel
Strand 5	D	122	125	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	190	192	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	258	first strand
Strand 2	D	277	279	anti-parallel
Strand 3	D	284	287	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	263	first strand
Strand 2	D	272	274	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GH3