Analysis of interatomic Contacts of Structural Units in PDB entry:
8GH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GH9 entry

There are 4 chains in PDB entry 8GH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	ASP 1056
C	GLN 19	ASP 1056
B	GLN 19	ASP 1056
D	GLN 19	ASP 1056

There are171 helices in PDB entry 8GH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	30	Right-handed alpha
Helix 2	AA2	A	97	102	Right-handed alpha
Helix 3	AA3	A	109	128	Right-handed alpha
Helix 4	AA4	A	129	136	Right-handed alpha
Helix 5	AA5	A	149	170	Right-handed alpha
Helix 6	AA6	A	173	180	Right-handed alpha
Helix 7	AA7	A	180	199	Right-handed alpha
Helix 8	AA8	A	210	215	Right-handed alpha
Helix 9	AA9	A	217	224	Right-handed alpha
Helix 10	AB1	A	229	260	Right-handed alpha
Helix 11	AB2	A	273	286	Right-handed alpha
Helix 12	AB3	A	297	319	Right-handed alpha
Helix 13	AB4	A	322	328	Right-handed alpha
Helix 14	AB5	A	352	364	Right-handed alpha
Helix 15	AB6	A	386	394	Right-handed alpha
Helix 16	AB7	A	407	415	Right-handed alpha
Helix 17	AB8	A	416	419	Right-handed 310
Helix 18	AB9	A	432	451	Right-handed alpha
Helix 19	AC1	A	465	471	Right-handed alpha
Helix 20	AC2	A	485	500	Right-handed alpha
Helix 21	AC3	A	502	510	Right-handed alpha
Helix 22	AC4	A	523	533	Right-handed alpha
Helix 23	AC5	A	601	606	Right-handed alpha
Helix 24	AC6	A	607	609	Right-handed 310
Helix 25	AC7	A	699	704	Right-handed alpha
Helix 26	AC8	A	706	713	Right-handed alpha
Helix 27	AC9	A	734	742	Right-handed alpha
Helix 28	AD1	A	747	751	Right-handed 310
Helix 29	AD2	A	759	767	Right-handed alpha
Helix 30	AD3	A	768	770	Right-handed 310
Helix 31	AD4	A	785	791	Right-handed alpha
Helix 32	AD5	A	817	830	Right-handed alpha
Helix 33	AD6	A	872	876	Right-handed 310
Helix 34	AD7	A	888	892	Right-handed 310
Helix 35	AD8	A	902	906	Right-handed 310
Helix 36	AD9	A	909	913	Right-handed 310
Helix 37	AE1	A	917	921	Right-handed 310
Helix 38	AE2	A	922	930	Right-handed alpha
Helix 39	AE3	A	932	941	Right-handed alpha
Helix 40	AE4	A	946	957	Right-handed alpha
Helix 41	AE5	A	996	1008	Right-handed alpha
Helix 42	AE6	C	21	26	Right-handed alpha
Helix 43	AE7	C	30	35	Right-handed alpha
Helix 44	AE8	C	109	114	Right-handed alpha
Helix 45	AE9	C	121	134	Right-handed alpha
Helix 46	AF1	C	149	170	Right-handed alpha
Helix 47	AF2	C	180	200	Right-handed alpha
Helix 48	AF3	C	209	214	Right-handed alpha
Helix 49	AF4	C	217	225	Right-handed alpha
Helix 50	AF5	C	232	260	Right-handed alpha
Helix 51	AF6	C	273	285	Right-handed alpha
Helix 52	AF7	C	286	288	Right-handed 310
Helix 53	AF8	C	297	316	Right-handed alpha
Helix 54	AF9	C	318	327	Right-handed alpha
Helix 55	AG1	C	352	364	Right-handed alpha
Helix 56	AG2	C	384	394	Right-handed alpha
Helix 57	AG3	C	407	415	Right-handed alpha
Helix 58	AG4	C	416	419	Right-handed 310
Helix 59	AG5	C	432	451	Right-handed alpha
Helix 60	AG6	C	465	471	Right-handed alpha
Helix 61	AG7	C	486	500	Right-handed alpha
Helix 62	AG8	C	502	509	Right-handed alpha
Helix 63	AG9	C	523	533	Right-handed alpha
Helix 64	AH1	C	549	562	Right-handed alpha
Helix 65	AH2	C	604	609	Right-handed 310
Helix 66	AH3	C	699	703	Right-handed 310
Helix 67	AH4	C	706	713	Right-handed alpha
Helix 68	AH5	C	733	739	Right-handed alpha
Helix 69	AH6	C	740	743	Right-handed 310
Helix 70	AH7	C	747	751	Right-handed 310
Helix 71	AH8	C	759	768	Right-handed alpha
Helix 72	AH9	C	785	792	Right-handed alpha
Helix 73	AI1	C	793	797	Right-handed 310
Helix 74	AI2	C	817	830	Right-handed alpha
Helix 75	AI3	C	884	891	Right-handed 310
Helix 76	AI4	C	902	905	Right-handed 310
Helix 77	AI5	C	906	912	Right-handed alpha
Helix 78	AI6	C	918	920	Right-handed 310
Helix 79	AI7	C	921	930	Right-handed alpha
Helix 80	AI8	C	932	942	Right-handed alpha
Helix 81	AI9	C	946	957	Right-handed alpha
Helix 82	AJ1	C	969	973	Right-handed 310
Helix 83	AJ2	C	985	991	Right-handed 310
Helix 84	AJ3	C	995	1008	Right-handed alpha
Helix 85	AJ4	C	1019	1021	Right-handed 310
Helix 86	AJ5	B	22	29	Right-handed alpha
Helix 87	AJ6	B	95	103	Right-handed alpha
Helix 88	AJ7	B	109	134	Right-handed alpha
Helix 89	AJ8	B	149	170	Right-handed alpha
Helix 90	AJ9	B	173	180	Right-handed alpha
Helix 91	AK1	B	180	199	Right-handed alpha
Helix 92	AK2	B	207	211	Right-handed 310
Helix 93	AK3	B	216	224	Right-handed alpha
Helix 94	AK4	B	230	260	Right-handed alpha
Helix 95	AK5	B	261	265	Right-handed 310
Helix 96	AK6	B	273	286	Right-handed alpha
Helix 97	AK7	B	297	319	Right-handed alpha
Helix 98	AK8	B	352	364	Right-handed alpha
Helix 99	AK9	B	384	394	Right-handed alpha
Helix 100	AL1	B	407	415	Right-handed alpha
Helix 101	AL2	B	416	419	Right-handed 310
Helix 102	AL3	B	432	451	Right-handed alpha
Helix 103	AL4	B	465	471	Right-handed alpha
Helix 104	AL5	B	486	500	Right-handed alpha
Helix 105	AL6	B	505	510	Right-handed alpha
Helix 106	AL7	B	523	533	Right-handed alpha
Helix 107	AL8	B	549	558	Right-handed alpha
Helix 108	AL9	B	602	609	Right-handed 310
Helix 109	AM1	B	699	704	Right-handed alpha
Helix 110	AM2	B	706	713	Right-handed alpha
Helix 111	AM3	B	734	742	Right-handed alpha
Helix 112	AM4	B	759	767	Right-handed alpha
Helix 113	AM5	B	768	770	Right-handed 310
Helix 114	AM6	B	785	791	Right-handed alpha
Helix 115	AM7	B	804	808	Right-handed 310
Helix 116	AM8	B	817	830	Right-handed alpha
Helix 117	AM9	B	872	876	Right-handed 310
Helix 118	AN1	B	884	892	Right-handed 310
Helix 119	AN2	B	902	905	Right-handed 310
Helix 120	AN3	B	906	912	Right-handed alpha
Helix 121	AN4	B	916	921	Right-handed 310
Helix 122	AN5	B	922	929	Right-handed alpha
Helix 123	AN6	B	931	941	Right-handed alpha
Helix 124	AN7	B	948	957	Right-handed alpha
Helix 125	AN8	B	996	1007	Right-handed alpha
Helix 126	AN9	D	24	28	Right-handed 310
Helix 127	AO1	D	29	33	Right-handed 310
Helix 128	AO2	D	111	116	Right-handed alpha
Helix 129	AO3	D	122	136	Right-handed alpha
Helix 130	AO4	D	150	170	Right-handed alpha
Helix 131	AO5	D	180	200	Right-handed alpha
Helix 132	AO6	D	207	212	Right-handed 310
Helix 133	AO7	D	213	224	Right-handed alpha
Helix 134	AO8	D	230	260	Right-handed alpha
Helix 135	AO9	D	273	285	Right-handed alpha
Helix 136	AP1	D	297	318	Right-handed alpha
Helix 137	AP2	D	319	327	Right-handed alpha
Helix 138	AP3	D	352	364	Right-handed alpha
Helix 139	AP4	D	384	394	Right-handed alpha
Helix 140	AP5	D	407	415	Right-handed alpha
Helix 141	AP6	D	416	419	Right-handed 310
Helix 142	AP7	D	432	451	Right-handed alpha
Helix 143	AP8	D	462	464	Right-handed 310
Helix 144	AP9	D	465	471	Right-handed alpha
Helix 145	AQ1	D	486	498	Right-handed alpha
Helix 146	AQ2	D	502	509	Right-handed alpha
Helix 147	AQ3	D	523	533	Right-handed alpha
Helix 148	AQ4	D	549	562	Right-handed alpha
Helix 149	AQ5	D	601	606	Right-handed alpha
Helix 150	AQ6	D	607	609	Right-handed 310
Helix 151	AQ7	D	699	703	Right-handed 310
Helix 152	AQ8	D	706	713	Right-handed alpha
Helix 153	AQ9	D	733	739	Right-handed alpha
Helix 154	AR1	D	740	743	Right-handed 310
Helix 155	AR2	D	747	751	Right-handed 310
Helix 156	AR3	D	760	767	Right-handed alpha
Helix 157	AR4	D	768	770	Right-handed 310
Helix 158	AR5	D	785	792	Right-handed alpha
Helix 159	AR6	D	793	797	Right-handed 310
Helix 160	AR7	D	817	830	Right-handed alpha
Helix 161	AR8	D	884	891	Right-handed 310
Helix 162	AR9	D	902	905	Right-handed 310
Helix 163	AS1	D	906	912	Right-handed alpha
Helix 164	AS2	D	918	920	Right-handed 310
Helix 165	AS3	D	921	930	Right-handed alpha
Helix 166	AS4	D	932	942	Right-handed alpha
Helix 167	AS5	D	946	957	Right-handed alpha
Helix 168	AS6	D	969	974	Right-handed 310
Helix 169	AS7	D	985	991	Right-handed 310
Helix 170	AS8	D	995	1008	Right-handed alpha
Helix 171	AS9	D	1019	1021	Right-handed 310

There are 20 sheets in PDB entry 8GH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	378	first strand
Strand 2	A	343	349	parallel
Strand 3	A	421	425	parallel
Strand 4	A	456	457	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	539	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	564	565	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	778	first strand
Strand 2	A	754	757	parallel
Strand 3	A	719	722	parallel
Strand 4	A	799	802	parallel
Strand 5	A	878	879	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1017	first strand
Strand 2	A	1031	1034	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	374	376	parallel
Strand 3	C	344	349	parallel
Strand 4	C	421	425	parallel
Strand 5	C	455	460	parallel
Strand 6	C	483	485	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	538	first strand
Strand 2	C	596	599	anti-parallel
Strand 3	C	564	565	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	569	first strand
Strand 2	C	579	581	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	776	780	first strand
Strand 2	C	753	758	parallel
Strand 3	C	718	722	parallel
Strand 4	C	799	802	parallel
Strand 5	C	878	882	parallel
Strand 6	C	915	916	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	976	979	first strand
Strand 2	C	1048	1053	anti-parallel
Strand 3	C	1010	1017	anti-parallel
Strand 4	C	1031	1035	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	201	203	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	377	first strand
Strand 2	B	343	349	parallel
Strand 3	B	421	425	parallel
Strand 4	B	456	460	parallel
Strand 5	B	483	485	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	539	first strand
Strand 2	B	595	599	anti-parallel
Strand 3	B	564	568	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	776	780	first strand
Strand 2	B	754	758	parallel
Strand 3	B	719	722	parallel
Strand 4	B	799	802	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	975	976	first strand
Strand 2	B	1051	1052	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1017	first strand
Strand 2	B	1031	1034	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	376	first strand
Strand 2	D	345	349	parallel
Strand 3	D	421	425	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	458	460	first strand
Strand 2	D	483	485	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	539	first strand
Strand 2	D	595	599	anti-parallel
Strand 3	D	564	569	anti-parallel
Strand 4	D	579	581	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	780	first strand
Strand 2	D	753	758	parallel
Strand 3	D	718	722	parallel
Strand 4	D	799	802	parallel
Strand 5	D	879	882	parallel
Strand 6	D	915	916	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	976	981	first strand
Strand 2	D	1048	1053	anti-parallel
Strand 3	D	1010	1017	anti-parallel
Strand 4	D	1031	1035	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GH9