Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8GHA entry

There are 3 chains in PDB entry 8GHA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 424	LYS 604
D	ALA 904	THR 1648
B	MET 1	PRO 381

There are 45 helices in PDB entry 8GHA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	477	486	Right-handed alpha
Helix 2	AA2	E	491	508	Right-handed alpha
Helix 3	AA3	E	577	590	Right-handed alpha
Helix 4	AA4	D	905	925	Right-handed alpha
Helix 5	AA5	D	928	931	Right-handed 310
Helix 6	AA6	D	932	943	Right-handed alpha
Helix 7	AA7	D	947	961	Right-handed alpha
Helix 8	AA8	D	984	1000	Right-handed alpha
Helix 9	AA9	D	1014	1026	Right-handed alpha
Helix 10	AB1	D	1033	1049	Right-handed alpha
Helix 11	AB2	D	1052	1061	Right-handed alpha
Helix 12	AB3	D	1075	1081	Right-handed alpha
Helix 13	AB4	D	1082	1101	Right-handed alpha
Helix 14	AB5	D	1105	1107	Right-handed 310
Helix 15	AB6	D	1108	1121	Right-handed alpha
Helix 16	AB7	D	1126	1148	Right-handed alpha
Helix 17	AB8	D	1148	1154	Right-handed alpha
Helix 18	AB9	D	1154	1182	Right-handed alpha
Helix 19	AC1	D	1186	1209	Right-handed alpha
Helix 20	AC2	D	1214	1216	Right-handed 310
Helix 21	AC3	D	1247	1273	Right-handed alpha
Helix 22	AC4	D	1280	1291	Right-handed alpha
Helix 23	AC5	D	1298	1303	Right-handed alpha
Helix 24	AC6	D	1305	1316	Right-handed alpha
Helix 25	AC7	D	1323	1340	Right-handed alpha
Helix 26	AC8	D	1344	1355	Right-handed alpha
Helix 27	AC9	D	1355	1360	Right-handed alpha
Helix 28	AD1	D	1373	1395	Right-handed alpha
Helix 29	AD2	D	1401	1415	Right-handed alpha
Helix 30	AD3	D	1418	1430	Right-handed alpha
Helix 31	AD4	D	1455	1472	Right-handed alpha
Helix 32	AD5	D	1474	1486	Right-handed alpha
Helix 33	AD6	D	1493	1514	Right-handed alpha
Helix 34	AD7	D	1516	1520	Right-handed 310
Helix 35	AD8	D	1523	1528	Right-handed alpha
Helix 36	AD9	D	1529	1544	Right-handed alpha
Helix 37	AE1	D	1545	1549	Right-handed 310
Helix 38	AE2	D	1550	1567	Right-handed alpha
Helix 39	AE3	D	1569	1571	Right-handed 310
Helix 40	AE4	D	1572	1584	Right-handed alpha
Helix 41	AE5	D	1585	1592	Right-handed alpha
Helix 42	AE6	D	1634	1648	Right-handed alpha
Helix 43	AE7	B	39	47	Right-handed alpha
Helix 44	AE8	B	352	357	Right-handed alpha
Helix 45	AE9	B	361	371	Right-handed alpha

There are 10 sheets in PDB entry 8GHA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	438	443	first strand
Strand 2	E	451	455	anti-parallel
Strand 3	B	2	7	anti-parallel
Strand 4	B	345	350	anti-parallel
Strand 5	B	336	341	anti-parallel
Strand 6	B	325	330	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	474	476	first strand
Strand 2	B	313	318	parallel
Strand 3	B	303	307	anti-parallel
Strand 4	B	292	297	anti-parallel
Strand 5	B	267	272	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	595	597	first strand
Strand 2	B	255	260	anti-parallel
Strand 3	B	243	248	anti-parallel
Strand 4	B	226	230	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1218	1219	first strand
Strand 2	D	1243	1244	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1225	1229	first strand
Strand 2	D	1235	1239	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	24	28	anti-parallel
Strand 3	B	33	38	anti-parallel
Strand 4	B	59	62	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	76	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	88	93	anti-parallel
Strand 4	B	110	116	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	129	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	144	149	anti-parallel
Strand 4	B	155	160	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	172	first strand
Strand 2	B	178	183	anti-parallel
Strand 3	B	187	192	anti-parallel
Strand 4	B	201	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	290	first strand
Strand 2	B	276	281	anti-parallel
Strand 3	B	358	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8GHA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHA