Analysis of interatomic Contacts of Structural Units in PDB entry:
8GHB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8GHB entry

There is 1 chain in PDB entry 8GHB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ILE 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8GHB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 139Right-handed alpha
Helix 2
AA2
A
156 160Right-handed 310
Helix 3
AA3
A
161 165Right-handed 310
Helix 4
AA4
A
167 192Right-handed alpha
Helix 5
AA5
A
199 206Right-handed 310
Helix 6
AA6
A
212 222Right-handed alpha
Helix 7
AA7
A
224 235Right-handed alpha
Helix 8
AA8
A
257 271Right-handed alpha
Helix 9
AA9
A
279 282Right-handed 310
Helix 10
AB1
A
336 357Right-handed alpha
Helix 11
AB2
A
364 379Right-handed alpha
Helix 12
AB3
A
383 390Right-handed alpha
Helix 13
AB4
A
395 407Right-handed alpha
Helix 14
AB5
A
412 418Right-handed alpha
Helix 15
AB6
A
423 436Right-handed alpha
Helix 16
AB7
A
442 450Right-handed alpha
Helix 17
AB8
A
458 483Right-handed alpha
Helix 18
AB9
A
485 491Right-handed alpha
Helix 19
AC1
A
492 504Right-handed alpha
Helix 20
AC2
A
521 537Right-handed alpha
Helix 21
AC3
A
537 545Right-handed alpha
Helix 22
AC4
A
545 552Right-handed alpha
Helix 23
AC5
A
553 557Right-handed 310
Helix 24
AC6
A
573 581Right-handed alpha
Helix 25
AC7
A
583 597Right-handed alpha
Helix 26
AC8
A
617 643Right-handed alpha
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There are 5 sheets in PDB entry 8GHB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
3 14anti-parallel
Strand 3
A
75 84anti-parallel
Strand 4
A
91 99anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
20 28anti-parallel
Strand 3
A
60 67anti-parallel
Strand 4
A
106 109anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
151 152anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
300 305anti-parallel
Strand 4
A
311 317anti-parallel
Strand 5
A
330 331anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
292 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il